Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 0.0e+00 2468.7 1300 100.0
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 0.0e+00 2086.6 1252 88.3
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 0.0e+00 1964.9 1318 80.6
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 0.0e+00 1815.0 1213 79.1
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1595.5 1361 66.6
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 0.0e+00 1527.3 1328 63.2
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 0.0e+00 1458.0 1312 62.7
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 0.0e+00 1434.9 1364 58.8
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 0.0e+00 1427.2 1312 60.2
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 0.0e+00 1426.8 1361 60.5
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 0.0e+00 1425.2 1315 60.8
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 0.0e+00 1386.3 1372 57.5
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 0.0e+00 1378.6 1320 60.2
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 0.0e+00 1374.4 1362 58.8
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 0.0e+00 1371.7 1313 60.3
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1370.1 1346 59.9
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1369.0 1353 59.1
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 0.0e+00 1358.6 1357 58.5
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 0.0e+00 1335.5 1341 57.5
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 0.0e+00 1325.1 1320 57.2
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 0.0e+00 1324.7 1342 58.4
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 0.0e+00 1321.2 1369 55.7
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 0.0e+00 1321.2 1363 56.8
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 0.0e+00 1308.9 1310 57.2
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 0.0e+00 1306.6 1287 57.6
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 0.0e+00 1302.3 1416 53.9
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 0.0e+00 1300.0 1350 56.4
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 0.0e+00 1274.6 1309 57.0
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1273.1 1351 55.2
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1264.6 1387 54.2
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 0.0e+00 1263.1 1249 56.4
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1253.0 1400 53.4
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1251.5 1345 56.7
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1243.4 1351 56.3
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 0.0e+00 1242.3 1290 56.0
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 0.0e+00 1223.4 1357 53.9
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 0.0e+00 1198.3 1354 54.4
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 0.0e+00 1167.5 1341 53.7
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1162.1 1276 54.6
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 0.0e+00 1154.0 1355 53.7
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 0.0e+00 1146.3 1365 51.3
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 0.0e+00 1144.8 1246 54.3
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 0.0e+00 1142.1 1294 53.0
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 0.0e+00 1131.7 1295 52.4
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 0.0e+00 1112.1 1369 50.5
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 0.0e+00 1106.7 1309 48.8
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 0.0e+00 1085.1 1345 49.7
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 0.0e+00 1079.7 1249 51.1
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 0.0e+00 1078.2 1218 52.5
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 8.9e-312 1074.3 1326 50.1
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 2.6e-309 1065.8 1362 47.9
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 2.8e-308 1062.4 1293 50.7
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 1.1e-307 1060.4 1292 48.8
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 9.7e-301 1037.3 1082 54.2
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 9.4e-296 1020.8 1229 50.0
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 2.4e-283 979.5 1268 48.2
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 5.9e-282 974.9 1263 47.7
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.3e-281 973.8 1266 46.4
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 1.2e-277 960.7 1269 48.8
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 2.0e-269 933.3 937 56.8
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 6.6e-265 918.3 1447 44.0
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 4.4e-253 879.0 1389 41.6
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 5.2e-246 855.5 1352 44.3
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 2.2e-244 850.1 1004 51.1
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 1.6e-242 844.0 891 53.0
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 8.7e-241 838.2 1244 44.4
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.2e-234 817.8 1268 41.3
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 1.1e-227 794.7 1303 43.5
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 1.8e-222 777.3 1321 40.3
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 1.0e-220 771.5 1262 42.6
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 3.9e-217 759.6 1395 38.6
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 1.1e-216 758.1 1324 40.6
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 4.3e-216 756.1 1332 39.2
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 2.8e-215 753.4 1316 39.2
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 9.0e-214 748.4 1332 40.2
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 4.2e-211 739.6 1317 39.9
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 7.9e-210 735.3 1269 40.7
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 1.8e-209 734.2 1318 39.7
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 1.5e-208 731.1 1318 38.5
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.3e-207 728.0 1256 38.4
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 2.8e-207 726.9 1354 40.2
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 2.6e-205 720.3 1319 40.3
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 2.7e-202 710.3 1216 38.2
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 2.7e-202 710.3 1306 38.1
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 7.4e-192 675.6 698 56.6
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 5.5e-187 659.4 755 51.0
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 1.3e-183 648.3 1228 37.7
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 3.0e-169 600.5 1309 35.4
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 3.2e-158 563.9 517 61.1
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 5.4e-158 563.1 1440 33.7
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.9e-140 503.8 550 54.9
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 5.6e-139 500.0 1001 37.6
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 3.5e-117 427.6 1178 30.6
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 1.1e-115 422.5 952 34.9
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 6.1e-93 347.1 1657 26.4
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 1.8e-89 335.5 1500 28.2
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.4e-89 335.1 351 55.6
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 1.8e-84 318.9 428 47.2
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 4.4e-83 314.3 756 33.9
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 7.4e-83 313.5 306 56.2
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 9.4e-78 296.6 363 46.3
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 1.4e-68 266.2 998 30.6
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 5.7e-67 260.8 218 71.6
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.2e-61 243.0 428 37.9
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 3.8e-55 221.5 1266 24.7
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 1.8e-52 212.6 203 55.2
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.6e-45 189.5 221 49.8
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 3.6e-45 188.3 210 46.2
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 4.7e-45 188.0 105 81.9
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 9.2e-41 173.7 266 38.7
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 2.3e-39 169.1 212 44.3
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 1.1e-36 160.2 238 42.9
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 2.4e-33 149.1 150 46.7
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 9.5e-30 137.1 112 91.1
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 2.8e-29 135.6 278 33.8
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 5.2e-28 131.3 104 59.6
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 9.9e-27 127.1 186 39.2
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.2e-26 125.9 251 45.8
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 6.6e-23 114.4 133 49.6
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 6.8e-20 104.4 86 57.0
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 8.9e-20 104.0 86 58.1
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 3.8e-18 98.6 187 37.4
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.9e-17 96.3 96 54.2
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 6.0e-16 91.3 113 48.7
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 6.0e-16 91.3 61 67.2
Cfa010207 Carpinus fangiana HOM05D001879 ORTHO05D007648 2.5e-14 85.9 47 91.5
Psat0ss2518g0240 Pisum sativum HOM05D001879 ORTHO05D007648 9.6e-14 84.0 129 38.0
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 1.3e-13 83.6 165 28.5
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 2.1e-13 82.8 146 32.9
Cc08_g07630 Coffea canephora HOM05D006523 ORTHO05D008212 2.1e-13 82.8 67 58.2
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 1.4e-12 80.1 86 50.0
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 7.6e-11 74.3 79 44.3
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.3e-10 73.6 79 43.0
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 2.2e-10 72.8 74 45.9
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 3.5e-08 65.5 44 63.6
BcaB03g13969 Brassica carinata HOM05D001879 ORTHO05D007648 2.3e-07 62.8 186 31.7
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 2.3e-07 62.8 183 28.4
Psat7g011440 Pisum sativum HOM05D000252 ORTHO05D015734 2.3e-07 62.8 46 58.7
arahy.Tifrunner.gnm1.ann1.4H8PLX Arachis hypogaea HOM05D001879 ORTHO05D021484 8.7e-07 60.8 54 46.3


User provided reference genes

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