Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 6.5e-151 537.3 269 100.0
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.4e-113 413.3 216 94.9
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 3.2e-113 412.1 216 94.9
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 3.1e-100 369.0 216 85.2
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 2.3e-95 352.8 217 86.2
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 8.7e-95 350.9 216 78.7
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 8.7e-95 350.9 216 78.7
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 1.3e-93 347.1 214 80.8
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 4.0e-92 342.0 216 77.3
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 1.5e-91 340.1 221 76.9
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 2.0e-91 339.7 213 80.3
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 3.4e-91 339.0 216 76.9
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 5.8e-91 338.2 216 77.3
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 9.9e-91 337.4 216 75.9
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 1.3e-90 337.0 217 75.6
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.3e-90 337.0 216 76.4
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 2.2e-90 336.3 220 75.0
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 8.4e-90 334.3 218 74.3
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 1.4e-89 333.6 216 75.5
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 3.2e-89 332.4 216 75.9
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 4.2e-89 332.0 216 74.5
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 4.2e-89 332.0 214 75.2
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 4.2e-89 332.0 216 75.9
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 7.1e-89 331.3 216 76.9
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 9.3e-89 330.9 216 75.0
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 2.7e-88 329.3 216 74.5
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 2.7e-88 329.3 216 74.1
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 3.5e-88 328.9 216 74.5
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 6.0e-88 328.2 222 73.4
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 7.9e-88 327.8 213 75.1
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 7.9e-88 327.8 218 77.5
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 1.0e-87 327.4 214 72.0
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.0e-87 327.4 217 73.7
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 2.3e-87 326.2 225 72.0
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.3e-87 326.2 214 72.9
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.3e-87 326.2 214 72.9
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 3.0e-87 325.9 214 73.8
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 3.9e-87 325.5 216 75.0
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 6.7e-87 324.7 216 73.1
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 1.9e-86 323.2 218 73.9
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 2.5e-86 322.8 215 74.4
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 3.3e-86 322.4 216 74.5
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 3.3e-86 322.4 215 75.3
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 1.3e-85 320.5 213 72.3
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 1.6e-85 320.1 215 74.0
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 1.6e-85 320.1 217 73.7
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.7e-85 318.9 216 72.2
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 3.7e-85 318.9 214 72.0
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 4.8e-85 318.5 216 74.5
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 1.1e-84 317.4 221 71.5
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 5.3e-84 315.1 221 71.9
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 3.4e-83 312.4 215 70.7
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 4.5e-83 312.0 220 72.7
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 4.5e-83 312.0 215 73.0
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 4.5e-83 312.0 214 71.5
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 5.8e-83 311.6 218 72.9
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 1.7e-82 310.1 214 71.0
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 2.9e-82 309.3 216 69.9
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 1.1e-81 307.4 222 67.1
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.1e-81 307.4 218 72.5
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.4e-81 307.0 214 72.9
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 1.9e-81 306.6 213 70.9
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 2.5e-81 306.2 216 71.3
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 4.2e-81 305.4 218 73.4
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 5.5e-81 305.1 220 68.6
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 5.5e-81 305.1 216 70.8
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 1.2e-80 303.9 206 72.8
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 1.2e-80 303.9 217 69.6
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 1.6e-80 303.5 228 69.3
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 2.7e-80 302.8 226 69.5
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 7.9e-80 301.2 223 65.0
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 1.0e-79 300.8 220 66.4
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 1.8e-79 300.1 220 66.8
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 1.8e-79 300.1 228 68.9
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 2.3e-79 299.7 224 65.6
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 2.3e-79 299.7 224 65.6
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 3.9e-79 298.9 214 72.4
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 5.1e-79 298.5 208 71.6
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 5.1e-79 298.5 199 74.9
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 6.7e-79 298.1 207 71.0
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 1.1e-78 297.4 223 65.0
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 1.9e-78 296.6 224 65.2
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 2.5e-78 296.2 224 65.2
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 2.5e-78 296.2 224 65.2
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 9.6e-78 294.3 211 71.1
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 1.3e-77 293.9 199 72.4
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 1.3e-77 293.9 217 66.8
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 1.6e-77 293.5 222 64.9
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 2.1e-77 293.1 221 65.2
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 2.1e-77 293.1 204 73.5
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 2.8e-77 292.7 184 77.7
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 2.8e-77 292.7 220 65.9
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 3.7e-77 292.4 224 64.3
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 3.7e-77 292.4 224 63.8
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 4.8e-77 292.0 172 82.0
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 6.3e-77 291.6 218 67.0
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 1.4e-76 290.4 218 66.5
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 2.4e-76 289.7 211 67.8
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 5.3e-76 288.5 221 64.3
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 1.2e-75 287.3 218 66.1
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 5.9e-75 285.0 202 72.8
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.9e-74 282.7 206 68.0
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 5.0e-74 282.0 204 69.6
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 6.5e-74 281.6 218 65.1
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 8.5e-74 281.2 209 65.6
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 1.9e-73 280.0 219 63.0
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 5.5e-73 278.5 223 66.4
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 2.1e-72 276.6 186 71.5
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 2.7e-72 276.2 185 70.8
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 2.7e-72 276.2 224 67.0
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 4.6e-72 275.4 249 57.8
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 8.2e-69 264.6 183 69.4
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.1e-68 264.2 187 67.9
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.8e-68 263.5 257 58.0
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.8e-68 263.5 257 58.0
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 1.5e-67 260.4 217 59.0
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 6.5e-66 255.0 220 62.7
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 1.9e-65 253.4 182 70.3
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 2.7e-64 249.6 171 70.2
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 6.1e-64 248.4 174 69.5
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 1.0e-63 247.7 215 57.2
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 3.0e-63 246.1 146 79.5
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.3e-61 240.7 145 77.9
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 2.3e-55 219.9 197 59.4
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 8.2e-53 211.5 150 71.3
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 1.0e-50 204.5 145 69.7
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 8.5e-50 201.4 170 61.2
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 4.2e-49 199.1 139 71.9
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.7e-45 187.2 197 47.7
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 6.3e-45 185.3 215 44.7
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 5.3e-44 182.2 142 59.9
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 3.5e-43 179.5 124 71.8
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.3e-42 177.6 164 51.8
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 7.2e-41 171.8 125 67.2
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 8.0e-40 168.3 143 57.3
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 1.4e-39 167.5 145 60.7
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.4e-36 157.5 107 69.2
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 1.4e-36 157.5 178 44.9
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 1.4e-36 157.5 213 40.8
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 6.5e-34 148.7 148 45.9
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 4.2e-33 146.0 205 38.5
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 1.2e-30 137.9 218 40.4
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 3.4e-30 136.3 155 41.3
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.0e-26 124.8 181 38.7
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 7.3e-25 118.6 75 69.3
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 1.5e-22 110.9 91 64.8
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 2.0e-22 110.5 77 63.6
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 2.6e-22 110.2 145 40.0
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 1.0e-18 98.2 77 63.6
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 1.7e-18 97.4 78 66.7
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 8.6e-18 95.1 75 62.7
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.6e-16 90.9 49 81.6
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 2.8e-16 90.1 89 58.4
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 1.2e-14 84.7 49 79.6
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 3.4e-14 83.2 69 58.0
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 2.9e-13 80.1 58 58.6
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 4.9e-13 79.3 48 70.8
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 1.2e-08 64.7 44 61.4
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 2.1e-08 63.9 55 60.0
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 2.1e-08 63.9 44 70.5
Psat1g082200 Pisum sativum HOM05D004585 ORTHO05D005640 2.3e-07 60.5 48 58.3
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 3.1e-07 60.1 33 81.8
Lsat_1_v5_gn_8_8220 Lactuca sativa HOM05D001543 ORTHO05D001722 5.2e-07 59.3 67 43.3
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 2.0e-06 57.4 33 78.8
CAN.G530.9 Capsicum annuum HOM05D000115 ORTHO05D000645 4.4e-06 56.2 38 68.4


User provided reference genes

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