Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 1.4e-307 1058.9 572 100.0
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 4.9e-289 997.3 563 95.6
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.6e-223 779.6 570 76.8
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 4.4e-197 691.8 568 69.5
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.3e-188 663.7 484 73.6
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 6.8e-182 641.3 562 65.5
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 2.3e-177 626.3 539 64.9
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 3.1e-174 615.9 582 60.3
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 1.1e-171 607.4 562 58.9
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 2.4e-171 606.3 566 61.3
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 7.8e-170 601.3 568 60.7
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 6.6e-169 598.2 567 60.3
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.1e-168 597.4 580 60.7
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 3.3e-168 595.9 568 61.4
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.1e-167 593.2 574 58.9
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 6.2e-167 591.7 574 58.9
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.1e-166 590.9 574 59.2
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 1.4e-166 590.5 562 60.1
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 5.3e-166 588.6 571 60.2
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 3.4e-165 585.9 566 58.7
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 4.5e-165 585.5 566 58.1
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 5.8e-165 585.1 537 60.3
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.7e-164 583.6 567 58.7
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 6.4e-164 581.6 532 60.2
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.9e-163 580.1 582 57.7
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 5.4e-163 578.6 574 56.8
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 6.7e-161 571.6 532 60.7
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.1e-160 570.9 567 56.6
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 1.3e-159 567.4 570 58.4
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.1e-159 566.6 537 59.4
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.1e-159 566.6 530 58.5
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 1.8e-158 563.5 531 60.1
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.0e-158 562.4 531 59.9
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.0e-158 562.4 563 57.9
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 9.0e-158 561.2 567 57.0
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 3.8e-156 555.8 567 57.8
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 3.8e-156 555.8 614 55.0
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 1.9e-155 553.5 572 55.8
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 4.2e-155 552.4 569 54.7
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.6e-154 550.4 578 53.8
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 1.8e-153 547.0 567 57.8
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 6.7e-153 545.0 565 58.6
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 1.5e-152 543.9 567 57.1
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 5.6e-152 542.0 577 57.4
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 7.4e-152 541.6 561 54.0
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 4.0e-150 535.8 565 56.8
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 5.8e-149 531.9 540 53.1
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 1.0e-148 531.2 560 57.1
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 1.7e-148 530.4 558 55.7
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 5.5e-147 525.4 536 58.0
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 5.5e-147 525.4 547 53.2
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.6e-146 523.9 569 58.3
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 1.0e-145 521.2 571 55.7
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.6e-143 513.8 569 56.9
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 5.5e-139 498.8 595 51.6
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 9.4e-139 498.0 482 56.0
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.2e-138 497.7 456 59.6
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.6e-138 497.3 573 55.1
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 1.3e-135 487.6 532 50.6
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 2.2e-135 486.9 554 53.2
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 4.8e-135 485.7 555 50.5
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 4.8e-135 485.7 557 50.1
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 8.2e-135 485.0 570 54.2
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 4.1e-134 482.6 555 50.5
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 5.3e-134 482.3 562 49.5
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 6.9e-134 481.9 544 50.9
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 3.4e-133 479.6 559 48.1
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.5e-133 479.2 577 50.6
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 2.9e-132 476.5 548 50.0
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 2.9e-132 476.5 584 49.8
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 6.5e-132 475.3 548 49.6
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 8.5e-132 474.9 556 48.9
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 7.2e-131 471.9 561 52.6
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 2.7e-130 469.9 554 50.4
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 3.6e-130 469.5 556 52.2
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 7.9e-130 468.4 562 48.6
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 1.8e-129 467.2 545 49.5
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 2.6e-128 463.4 576 51.2
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 3.3e-128 463.0 604 47.2
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 9.7e-128 461.5 566 52.3
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 4.8e-127 459.1 557 51.2
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 8.2e-127 458.4 578 49.7
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.1e-126 458.0 570 51.1
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 5.3e-126 455.7 600 47.7
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 7.0e-126 455.3 558 47.3
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 7.0e-126 455.3 586 50.0
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 7.7e-125 451.8 580 50.9
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 1.0e-124 451.4 586 50.0
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 1.7e-124 450.7 521 55.9
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 2.9e-124 449.9 556 50.9
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.1e-123 448.0 560 49.6
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 9.4e-123 444.9 597 47.1
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 3.9e-121 439.5 578 48.3
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 4.4e-120 436.0 563 47.1
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 2.0e-117 427.2 569 48.5
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 2.0e-117 427.2 574 45.3
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.7e-116 424.1 380 62.1
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 2.7e-114 416.8 305 65.2
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 4.7e-114 416.0 568 47.5
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 1.4e-113 414.5 575 46.6
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 1.4e-113 414.5 594 47.0
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 1.2e-112 411.4 565 46.4
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 4.7e-106 389.4 570 43.9
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 8.8e-105 385.2 601 44.1
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 4.1e-102 376.3 543 43.5
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.2e-101 374.8 498 43.8
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.2e-101 374.8 561 47.6
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 6.6e-100 369.0 731 37.5
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 1.5e-99 367.9 566 44.3
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 2.3e-97 360.5 566 44.5
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 2.8e-95 353.6 473 45.5
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 2.7e-93 347.1 563 43.0
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 5.6e-91 339.3 654 36.7
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 2.9e-87 327.0 521 42.6
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 6.6e-84 315.8 449 44.3
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 4.1e-78 296.6 545 36.1
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 4.0e-73 280.0 590 35.1
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.7e-71 273.5 538 35.5
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 2.7e-69 267.3 271 50.9
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 5.6e-67 259.6 211 59.2
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 8.9e-65 252.3 667 29.8
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 3.4e-64 250.4 495 38.2
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 3.0e-60 237.3 428 43.9
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 3.3e-59 233.8 705 28.8
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.1e-58 231.1 292 42.1
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 6.4e-55 219.5 533 35.6
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.3e-51 207.2 169 60.9
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 9.6e-43 179.1 298 35.2
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 9.3e-38 162.5 478 26.6
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 1.2e-37 162.2 142 57.7
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 3.9e-36 157.1 164 60.4
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.9e-36 157.1 546 28.2
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 1.9e-35 154.8 278 34.2
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 4.8e-34 150.2 135 59.3
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 9.0e-33 146.0 186 51.6
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 1.3e-26 125.6 265 30.2
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 3.7e-26 124.0 81 70.4
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.7e-26 124.0 81 70.4
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 7.2e-22 109.8 164 36.0
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 5.9e-16 90.1 123 48.8
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 1.2e-08 65.9 79 43.0
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.9e-06 58.5 104 29.8


User provided reference genes

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