Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 0.0e+00 1300.8 689 100.0
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 0.0e+00 1099.3 695 83.6
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 2.7e-294 1015.0 691 77.6
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 5.0e-272 941.0 705 72.8
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 3.1e-261 905.2 669 73.4
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 8.6e-256 887.1 700 69.1
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 9.5e-255 883.6 696 68.1
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 2.0e-252 875.9 700 69.4
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 2.6e-252 875.5 699 70.8
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 2.9e-251 872.1 707 68.3
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 8.4e-251 870.5 714 67.1
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 1.4e-250 869.8 715 68.4
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 1.9e-250 869.4 705 67.1
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 4.1e-250 868.2 718 69.9
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 1.9e-247 859.4 721 67.7
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 1.9e-247 859.4 705 67.8
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 2.5e-247 859.0 716 67.0
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 2.1e-246 855.9 707 66.5
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 1.8e-245 852.8 703 68.4
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 3.1e-245 852.0 701 68.5
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 5.2e-245 851.3 706 68.0
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 2.9e-243 845.5 707 66.1
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 3.8e-243 845.1 709 67.0
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 1.1e-242 843.6 682 68.3
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 3.2e-242 842.0 711 67.2
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 7.8e-241 837.4 704 67.5
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.1e-239 833.6 715 66.7
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 3.3e-239 832.0 711 68.5
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 9.6e-239 830.5 716 65.4
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.3e-238 830.1 707 66.9
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 8.1e-238 827.4 703 66.4
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 3.1e-237 825.5 710 66.5
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 3.4e-236 822.0 717 67.4
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 1.7e-235 819.7 716 65.5
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 6.4e-235 817.8 730 63.6
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 3.2e-234 815.5 710 65.2
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 2.3e-232 809.3 713 67.0
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 1.9e-231 806.2 742 64.8
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 9.6e-231 803.9 651 68.4
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.1e-230 802.7 697 65.7
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 1.4e-229 800.0 696 64.9
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 1.3e-227 793.5 703 65.0
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 2.4e-226 789.3 711 66.8
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 1.6e-225 786.6 703 63.2
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 2.7e-225 785.8 714 63.3
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 1.0e-224 783.9 713 65.5
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.9e-224 781.9 697 64.6
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 1.5e-223 780.0 711 63.0
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 1.4e-221 773.5 720 65.6
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 1.8e-221 773.1 697 63.6
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.1e-221 772.3 695 63.7
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 4.0e-221 771.9 701 63.6
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 6.9e-221 771.2 698 62.8
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.0e-220 769.6 706 62.6
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 2.0e-220 769.6 696 63.1
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 4.5e-220 768.5 696 62.9
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 5.8e-220 768.1 555 71.2
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 7.6e-220 767.7 696 63.6
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 1.3e-219 766.9 706 61.9
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 3.2e-218 762.3 700 63.9
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 7.1e-218 761.1 640 65.3
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 9.3e-218 760.8 697 60.0
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 3.3e-215 752.3 696 60.9
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 9.6e-215 750.7 704 64.1
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 2.1e-214 749.6 709 64.3
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 3.1e-213 745.7 696 60.3
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 5.3e-213 745.0 704 59.5
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 1.2e-212 743.8 701 61.5
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 4.5e-212 741.9 698 62.0
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 8.5e-211 737.6 707 64.9
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 1.4e-210 736.9 708 61.0
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 1.2e-209 733.8 712 59.8
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 7.9e-209 731.1 701 61.5
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 4.3e-207 725.3 705 60.3
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 1.8e-205 719.9 700 61.4
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 6.9e-205 718.0 701 60.1
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 1.2e-204 717.2 696 58.9
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 5.9e-204 714.9 693 62.2
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 5.1e-200 701.8 685 62.6
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 6.7e-200 701.4 708 59.2
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 7.4e-199 698.0 714 59.7
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 4.8e-198 695.3 724 61.5
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 3.1e-197 692.6 713 61.2
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 7.7e-196 688.0 710 58.5
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 1.7e-195 686.8 701 60.6
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 1.4e-194 683.7 699 57.1
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 1.2e-193 680.6 601 63.4
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.7e-193 679.5 749 56.6
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 6.7e-192 674.9 700 57.0
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 8.8e-192 674.5 700 57.0
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 8.8e-192 674.5 576 64.2
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 2.6e-191 672.9 706 56.5
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 2.6e-191 672.9 548 67.3
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 2.6e-191 672.9 703 57.5
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 1.0e-187 661.0 700 56.1
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 5.7e-183 645.2 697 56.5
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 3.7e-182 642.5 546 63.4
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 6.5e-179 631.7 319 99.1
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 1.2e-177 627.5 640 62.0
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 5.2e-176 622.1 547 62.0
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 8.8e-176 621.3 717 54.0
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 5.4e-173 612.1 716 52.8
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 4.7e-169 599.0 716 52.1
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 1.8e-168 597.0 577 58.4
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 2.3e-155 553.5 350 86.0
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 4.3e-154 549.3 565 56.8
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 1.2e-148 531.2 441 68.3
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 3.5e-148 529.6 490 61.4
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 4.7e-145 519.2 602 53.7
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 5.2e-144 515.8 574 54.0
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 1.9e-133 480.7 679 47.4
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 1.3e-131 474.6 674 45.7
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 2.1e-129 467.2 350 71.1
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 1.3e-121 441.4 360 67.5
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 2.7e-116 423.7 327 69.7
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 1.5e-111 407.9 393 58.8
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 2.9e-110 403.7 322 68.9
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 4.6e-100 369.8 598 41.0
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 9.1e-88 328.9 809 33.3
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 8.5e-86 322.4 855 32.2
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 1.3e-81 308.5 353 59.8
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 1.0e-78 298.9 380 50.8
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 4.4e-74 283.5 363 49.0
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 8.2e-73 279.3 316 54.4
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 9.1e-72 275.8 223 65.9
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 1.4e-56 225.3 413 38.7
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 7.7e-55 219.5 299 47.8
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 1.7e-54 218.4 142 81.0
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 1.6e-52 211.8 284 47.5
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.0e-39 168.3 125 72.0
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 3.5e-39 167.5 216 51.4
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 2.3e-38 164.9 175 49.1
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 3.6e-36 157.5 271 39.9
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 4.0e-35 154.1 131 64.1
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 6.4e-33 146.7 161 52.8
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 1.3e-22 112.5 817 23.6
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 3.9e-22 110.9 81 70.4
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 4.3e-13 80.9 116 48.3
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 2.8e-12 78.2 150 46.0
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 3.4e-10 71.2 56 55.4
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 6.0e-07 60.5 64 45.3
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 7.8e-07 60.1 75 40.0
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 1.0e-06 59.7 70 41.4
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 1.0e-06 59.7 70 41.4
Gohir.D11G238400 Gossypium hirsutum HOM05D001562 ORTHO05D001437 1.0e-06 59.7 145 30.3
Pp3c4_15980 Physcomitrium patens HOM05D000874 ORTHO05D001267 1.3e-06 59.3 127 34.6
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 1.7e-06 58.9 81 40.7
Gorai.007G252400 Gossypium raimondii HOM05D001562 ORTHO05D001437 3.0e-06 58.2 145 30.3
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 3.9e-06 57.8 70 40.0
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 3.9e-06 57.8 44 54.5
SEGI_09522 Sequoiadendron giganteum HOM05D000874 ORTHO05D001267 5.1e-06 57.4 91 39.6
Gohir.A11G224900 Gossypium hirsutum HOM05D001562 ORTHO05D001437 6.6e-06 57.0 135 30.4
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 6.6e-06 57.0 70 38.6
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 6.6e-06 57.0 182 30.8
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 8.7e-06 56.6 63 42.9
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 8.7e-06 56.6 71 40.8
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 8.7e-06 56.6 73 39.7


User provided reference genes

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