Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 8.3e-232 806.6 385 100.0
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 1.7e-208 729.2 385 89.9
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.2e-208 728.8 385 89.1
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.3e-205 718.8 385 89.1
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 4.0e-186 654.8 384 80.5
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.4e-185 651.7 385 81.0
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 4.5e-185 651.4 383 80.4
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 8.7e-181 637.1 384 78.9
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 9.6e-172 607.1 384 74.0
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.3e-171 606.7 385 72.7
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.3e-171 606.7 384 74.2
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 2.1e-171 605.9 384 73.4
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.1e-171 605.9 384 74.0
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 6.2e-171 604.4 384 72.7
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 8.1e-171 604.0 385 72.7
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.8e-170 602.8 384 72.7
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.8e-170 602.8 385 72.5
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 3.1e-170 602.1 385 72.7
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.3e-170 601.3 385 73.0
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 5.3e-170 601.3 384 73.4
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 1.5e-169 599.7 384 73.2
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 1.5e-169 599.7 384 73.2
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 6.5e-168 594.3 391 72.9
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.9e-167 592.8 384 71.4
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 1.9e-167 592.8 384 70.8
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 2.5e-167 592.4 384 72.1
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.0e-165 587.0 383 71.3
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.3e-165 586.6 385 70.6
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 5.1e-165 584.7 383 70.5
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.2e-161 573.5 384 70.1
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 3.4e-161 572.0 384 69.5
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.9e-161 571.2 384 69.3
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.7e-160 569.7 384 70.1
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 3.2e-159 565.5 384 68.8
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 3.2e-159 565.5 384 69.3
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 9.3e-159 563.9 389 69.4
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.2e-158 563.5 386 67.6
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 1.8e-157 559.7 385 67.0
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 5.1e-157 558.1 392 68.6
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 6.7e-157 557.8 386 67.1
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 1.1e-156 557.0 386 66.6
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.5e-156 556.6 385 67.0
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 1.5e-156 556.6 384 69.0
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.9e-156 556.2 384 68.2
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 3.3e-156 555.4 385 67.0
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.3e-156 555.4 378 68.5
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 4.3e-156 555.1 385 66.8
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 4.3e-156 555.1 385 66.8
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 7.4e-156 554.3 385 66.8
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 7.4e-156 554.3 384 66.4
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 1.3e-155 553.5 386 66.3
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 1.8e-154 549.7 386 65.5
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.5e-153 546.6 384 66.1
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 1.5e-153 546.6 386 66.3
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 2.0e-153 546.2 385 64.4
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 5.9e-153 544.7 386 66.1
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.0e-152 543.9 378 67.7
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.1e-151 540.4 386 65.8
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 7.2e-151 537.7 385 62.9
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.2e-150 537.0 384 65.4
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 1.6e-150 536.6 386 65.3
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 3.6e-150 535.4 385 65.7
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 1.4e-149 533.5 374 65.2
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.3e-149 532.7 377 65.3
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.0e-149 532.3 377 64.7
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 2.6e-148 529.3 384 64.1
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 7.4e-148 527.7 384 63.5
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.3e-147 526.9 386 64.2
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 2.8e-147 525.8 386 63.2
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 2.8e-147 525.8 374 65.5
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 8.2e-147 524.2 387 63.3
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.4e-146 523.5 386 62.2
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.4e-146 522.7 373 65.4
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.4e-146 522.7 373 65.4
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 2.4e-146 522.7 388 64.2
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 9.1e-146 520.8 384 63.5
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 2.0e-145 519.6 384 63.3
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.0e-145 519.6 374 66.0
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.0e-145 519.6 374 66.0
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 4.5e-145 518.5 387 66.7
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 7.7e-145 517.7 387 63.8
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 3.8e-144 515.4 384 62.8
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 8.5e-144 514.2 394 61.7
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 1.1e-143 513.8 385 61.0
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.4e-143 513.5 373 64.9
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.9e-143 513.1 379 62.3
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.9e-143 513.1 384 62.2
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.5e-143 512.7 384 62.5
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 7.2e-143 511.1 379 62.0
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.2e-142 510.4 384 61.7
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.6e-142 510.0 374 63.1
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 3.6e-142 508.8 385 62.1
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.8e-141 506.5 374 63.1
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.3e-141 506.1 386 61.9
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 3.0e-141 505.8 385 62.1
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 4.4e-140 501.9 374 61.5
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.3e-139 500.4 387 61.0
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 2.8e-139 499.2 385 61.6
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 6.3e-139 498.0 375 62.9
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.1e-138 497.3 376 62.0
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.3e-136 490.3 385 60.0
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 5.0e-136 488.4 385 58.2
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 8.5e-136 487.6 385 60.3
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 1.1e-135 487.3 386 61.1
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 7.2e-135 484.6 385 59.0
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 1.8e-133 479.9 398 58.5
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 4.0e-133 478.8 374 58.0
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.5e-132 476.9 398 58.5
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 7.5e-132 474.6 399 57.4
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 1.3e-131 473.8 386 57.5
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 1.4e-130 470.3 385 58.2
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 9.1e-130 467.6 386 57.3
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 1.2e-129 467.2 375 59.2
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 1.6e-129 466.8 385 57.9
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 4.2e-127 458.8 385 56.6
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 8.0e-126 454.5 399 56.6
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.4e-122 443.7 373 55.2
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.6e-118 430.3 394 55.1
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 2.1e-118 429.9 375 55.5
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 1.2e-113 414.1 389 52.7
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.6e-113 413.7 397 49.9
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.9e-111 406.8 393 51.9
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.2e-108 397.5 229 85.2
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 1.5e-108 397.1 390 49.7
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.4e-106 390.6 376 52.9
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.6e-105 387.1 390 52.1
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.0e-105 386.7 397 47.6
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 1.0e-104 384.4 389 51.7
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 6.8e-101 371.7 387 50.9
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 4.1e-98 362.5 390 48.2
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.1e-95 354.4 394 45.4
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 6.8e-93 345.1 394 46.2
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 6.6e-88 328.6 396 44.9
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.6e-87 325.5 384 47.4
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 2.6e-84 316.6 395 40.8
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 2.3e-80 303.5 238 60.1
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.4e-77 293.5 384 42.2
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.4e-74 284.3 384 42.7
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 7.8e-73 278.5 384 41.7
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 4.8e-70 269.2 384 41.1
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 3.1e-69 266.5 387 41.6
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 3.4e-68 263.1 393 39.2
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 2.9e-59 233.4 156 68.6
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 6.4e-59 232.3 186 57.0
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.2e-49 201.4 410 31.5
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 6.7e-40 169.1 155 53.5
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 2.9e-35 153.7 119 61.3
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.0e-31 141.0 320 29.4
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.8e-29 134.4 379 25.3
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 4.7e-25 119.8 107 56.1
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 3.0e-24 117.1 68 76.5
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 1.8e-13 81.3 392 23.5
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 6.5e-11 72.8 45 75.6
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 1.0e-08 65.5 63 52.4
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.8e-08 64.7 47 57.4


User provided reference genes

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