Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013171 Carpinus fangiana HOM05D006924 ORTHO05D008218 1.1e-160 570.1 338 100.0
Haze_21546 Corylus avellana HOM05D006924 ORTHO05D008218 2.4e-118 429.5 324 84.9
QL02p022351 Quercus lobata HOM05D006924 ORTHO05D008218 9.2e-110 401.0 342 72.5
GSVIVG01035827001 Vitis vinifera HOM05D006924 ORTHO05D008218 2.4e-94 349.7 346 61.3
CSS0024674 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 9.6e-91 337.8 337 59.1
CiPaw.08G012700 Carya illinoinensis HOM05D006924 ORTHO05D008218 8.4e-87 324.7 293 71.7
TWI34G0486 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 2.7e-85 319.7 340 65.0
Ciclev10010768m.g Citrus clementina HOM05D006924 ORTHO05D008218 2.5e-83 313.2 333 65.8
Dinv15967 Davidia involucrata HOM05D006924 ORTHO05D008218 5.6e-83 312.0 350 61.7
Dinv18229 Davidia involucrata HOM05D006924 ORTHO05D008218 5.6e-83 312.0 350 61.7
COL.COLO4_00196 Corchorus olitorius HOM05D006924 ORTHO05D008218 9.0e-81 304.7 348 64.9
Duzib187G1593 Durio zibethinus HOM05D006924 ORTHO05D008218 1.2e-80 304.3 343 55.4
Thecc.09G150000 Theobroma cacao HOM05D006924 ORTHO05D008218 1.5e-80 303.9 320 60.0
Manes.03G016800 Manihot esculenta HOM05D006924 ORTHO05D008218 3.4e-80 302.8 325 63.4
vmacro11153 Vaccinium macrocarpon HOM05D006924 ORTHO05D008218 4.9e-79 298.9 352 58.2
Potri.006G251700 Populus trichocarpa HOM05D006924 ORTHO05D008218 6.4e-79 298.5 347 62.0
Gohir.D08G257200 Gossypium hirsutum HOM05D006924 ORTHO05D008218 4.2e-78 295.8 351 59.3
Sabra06G0196700 Salix brachista HOM05D006924 ORTHO05D008218 5.4e-78 295.4 347 61.1
TWI63G1089 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 1.6e-77 293.9 346 55.5
Gorai.004G274200 Gossypium raimondii HOM05D006924 ORTHO05D008218 2.1e-77 293.5 351 59.0
Glyma.04G068000 Glycine max HOM05D006924 ORTHO05D008218 3.9e-76 289.3 275 60.7
FAN24G1985 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.6e-74 283.9 351 55.0
Actinidia13248 Actinidia chinensis HOM05D006924 ORTHO05D008218 2.8e-74 283.1 278 63.7
FvH4_2g29450 Fragaria vesca HOM05D006924 ORTHO05D008218 1.1e-73 281.2 351 56.1
Eucgr.C02804 Eucalyptus grandis HOM05D006924 ORTHO05D008218 2.4e-73 280.0 347 49.9
Gohir.A08G236600 Gossypium hirsutum HOM05D006924 ORTHO05D008218 2.4e-73 280.0 348 59.2
Cpa.g.sc115.10 Carica papaya HOM05D006924 ORTHO05D008218 4.0e-73 279.3 347 55.9
Nn8g39393 Nelumbo nucifera HOM05D006924 ORTHO05D008218 9.0e-73 278.1 352 59.7
Migut.E01789 Erythranthe guttata HOM05D006924 ORTHO05D008218 2.0e-72 276.9 286 63.6
CANSAT21G2575 Cannabis sativa HOM05D006924 ORTHO05D008218 2.6e-72 276.6 327 56.9
Glyma.06G069700 Glycine max HOM05D006924 ORTHO05D008218 3.4e-72 276.2 343 53.4
VMungo1309G0550 Vigna mungo HOM05D006924 ORTHO05D008218 3.4e-72 276.2 269 60.6
MD08G1147000 Malus domestica HOM05D006924 ORTHO05D008218 7.6e-72 275.0 356 54.5
THA.LOC104815037 Tarenaya hassleriana HOM05D006924 ORTHO05D008218 7.6e-72 275.0 345 55.1
FAN27G0236 Fragaria x ananassa HOM05D006924 ORTHO05D008218 9.9e-72 274.6 355 54.4
FAN20G0173 Fragaria x ananassa HOM05D006924 ORTHO05D008218 2.2e-71 273.5 354 54.8
Rhsim02G0195700 Rhododendron simsii HOM05D006924 ORTHO05D008218 4.9e-71 272.3 342 56.7
DCAR_001517 Daucus carota HOM05D006924 ORTHO05D008218 1.4e-70 270.8 279 60.6
Lalb_Chr23g0268731 Lupinus albus HOM05D006924 ORTHO05D008218 2.4e-70 270.0 256 59.4
ClCG05G017060 Citrullus lanatus HOM05D006924 ORTHO05D008218 3.2e-70 269.6 346 59.8
MELO3C003685.2 Cucumis melo HOM05D006924 ORTHO05D008218 3.2e-70 269.6 271 64.2
Hund25749 Selenicereus undatus HOM05D006924 ORTHO05D008218 4.2e-70 269.2 361 52.9
Aa31LG3G15920 Aethionema arabicum HOM05D006924 ORTHO05D008218 7.1e-70 268.5 260 63.8
RcHm_v2.0_Chr6g0298241 Rosa chinensis HOM05D006924 ORTHO05D008218 1.2e-69 267.7 363 53.4
PSO455G0271 Papaver somniferum HOM05D006924 ORTHO05D008218 2.7e-69 266.5 294 59.9
CsaV3_3G046540 Cucumis sativus L. HOM05D006924 ORTHO05D008218 7.9e-69 265.0 273 63.0
Ca_15720_v3 Cicer arietinum L. HOM05D006924 ORTHO05D008218 1.0e-68 264.6 263 57.0
Nitab4.5_0002007g0080 Nicotiana tabacum HOM05D006924 ORTHO05D008218 2.3e-68 263.5 269 60.2
Phvul.009G094300 Phaseolus vulgaris HOM05D006924 ORTHO05D008218 2.3e-68 263.5 271 60.5
Ah.12g064050 Amaranthus hybridus HOM05D006924 ORTHO05D008218 3.9e-68 262.7 330 53.9
Lj1g0004722 Lotus japonicus HOM05D006924 ORTHO05D008218 3.9e-68 262.7 265 57.4
Cc08_g00950 Coffea canephora HOM05D006924 ORTHO05D008218 1.9e-67 260.4 267 58.1
PSO455G0276 Papaver somniferum HOM05D006924 ORTHO05D008218 2.5e-67 260.0 295 59.0
Psat5g028520 Pisum sativum HOM05D006924 ORTHO05D008218 3.3e-67 259.6 270 56.3
Aqoxy7G02106 Aquilegia oxysepala HOM05D006924 ORTHO05D008218 9.6e-67 258.1 284 59.2
CAN.G6.23 Capsicum annuum HOM05D006924 ORTHO05D008218 3.7e-66 256.1 267 56.9
CARHR201990 Cardamine hirsuta HOM05D006924 ORTHO05D008218 4.8e-66 255.8 311 57.2
PSO170G6279 Papaver somniferum HOM05D006924 ORTHO05D008218 6.2e-66 255.4 289 58.1
Nitab4.5_0009676g0020 Nicotiana tabacum HOM05D006924 ORTHO05D008218 5.3e-65 252.3 265 57.7
CDE04G2397 Ceratophyllum demersum HOM05D006924 ORTHO05D008218 6.9e-65 251.9 258 57.0
unitig_26.g9317 Utricularia gibba HOM05D006924 ORTHO05D008218 6.9e-65 251.9 258 56.2
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 2.0e-64 250.4 279 59.1
Lsat_1_v5_gn_5_30481 Lactuca sativa HOM05D006924 ORTHO05D008218 2.6e-64 250.0 373 48.0
BcaB08g37076 Brassica carinata HOM05D006924 ORTHO05D008218 3.4e-64 249.6 266 63.2
MSTRG.1715 Avicennia marina HOM05D006924 ORTHO05D008218 7.6e-64 248.4 345 53.3
Sp6g32290 Schrenkiella parvula HOM05D006924 ORTHO05D008218 7.6e-64 248.4 257 63.0
Sc09g0008380 Simmondsia chinensis HOM05D006924 ORTHO05D008218 7.6e-64 248.4 267 59.2
Carub.0006s0974 Capsella rubella HOM05D006924 ORTHO05D008218 1.0e-63 248.1 256 61.7
Rhsim02G0198800 Rhododendron simsii HOM05D006924 ORTHO05D008218 1.0e-63 248.1 400 46.2
AL6G21900 Arabidopsis lyrata HOM05D006924 ORTHO05D008218 2.2e-63 246.9 263 62.4
BraA10t44702Z Brassica rapa HOM05D006924 ORTHO05D008218 2.9e-63 246.5 260 62.3
Medtr3g107530 Medicago truncatula HOM05D006924 ORTHO05D008218 2.9e-63 246.5 257 56.0
ECA246G2052 Erigeron canadensis HOM05D000004 ORTHO05D000048 6.5e-63 245.4 304 50.3
MBI04_g07630_MAGBIO Magnolia biondii HOM05D006924 ORTHO05D008218 6.5e-63 245.4 319 57.7
arahy.Tifrunner.gnm1.ann1.SMV5T8 Arachis hypogaea HOM05D006924 ORTHO05D008218 1.4e-62 244.2 318 56.6
Sed0001141 Sechium edule HOM05D006924 ORTHO05D008218 1.4e-62 244.2 261 60.5
AT5G11270 Arabidopsis thaliana HOM05D006924 ORTHO05D008218 4.2e-62 242.7 265 61.5
A10p26450 Brassica napus HOM05D006924 ORTHO05D008218 1.2e-61 241.1 254 62.6
BolC9t59383H Brassica oleracea HOM05D006924 ORTHO05D008218 1.6e-61 240.7 253 62.1
HanXRQChr08g0234821 Helianthus annuus HOM05D006924 ORTHO05D008218 6.0e-61 238.8 308 47.1
BcaC04g19245 Brassica carinata HOM05D006924 ORTHO05D008218 7.9e-61 238.4 260 60.4
arahy.Tifrunner.gnm1.ann1.748QI4 Arachis hypogaea HOM05D006924 ORTHO05D008218 2.3e-60 236.9 265 57.7
PGSC0003DMG400020785 Solanum tuberosum HOM05D006924 ORTHO05D008218 3.0e-60 236.5 280 52.1
Peaxi162Scf00073g01120 Petunia axillaris HOM05D006924 ORTHO05D008218 6.7e-60 235.3 268 57.8
Prupe.1G478200 Prunus persica HOM05D006924 ORTHO05D008218 8.7e-60 235.0 375 50.4
Thhalv10013990m.g Eutrema salsugineum HOM05D006924 ORTHO05D008218 7.4e-59 231.9 252 58.3
Sopen08g016210 Solanum pennellii HOM05D006924 ORTHO05D008218 2.8e-58 229.9 283 51.6
Solyc08g061140.3 Solanum lycopersicum HOM05D006924 ORTHO05D008218 4.8e-58 229.2 283 50.9
ATR0564G047 Amborella trichopoda HOM05D006924 ORTHO05D008218 8.2e-58 228.4 253 54.5
FAN15G1620 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.4e-57 227.6 249 60.2
EL10Ac2g02609 Beta vulgaris HOM05D006924 ORTHO05D008218 4.1e-57 226.1 273 52.4
Zm00001eb385620 Zea mays HOM05D006924 ORTHO05D008218 6.9e-57 225.3 268 52.2
Os06g0601000 Oryza sativa ssp. japonica HOM05D006924 ORTHO05D008218 4.5e-56 222.6 254 52.4
PGR044G1352 Punica granatum HOM05D006924 ORTHO05D008218 1.7e-55 220.7 306 53.9
TPR.G31774 Trifolium pratense HOM05D006924 ORTHO05D008218 8.5e-55 218.4 228 54.8
Atru.chr7.2389 Acer truncatum HOM05D006924 ORTHO05D008218 7.2e-54 215.3 341 47.2
AUR62024897 Chenopodium quinoa HOM05D006924 ORTHO05D008218 1.3e-52 211.1 275 47.6
SalBow1G5089 Salvia bowleyana HOM05D006924 ORTHO05D008218 2.6e-48 196.8 151 68.9
Lj7C719T2 Lonicera japonica HOM05D006924 ORTHO05D008218 3.9e-44 183.0 230 55.7
TAR626G1567 Trochodendron aralioides HOM05D006924 ORTHO05D008218 1.5e-43 181.0 151 68.2
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 2.2e-42 177.2 165 61.2
CSS0004992 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 4.5e-40 169.5 123 72.4
AUR62030642 Chenopodium quinoa HOM05D006924 ORTHO05D008218 6.1e-29 132.5 275 36.7
Atru.chr10.503 Acer truncatum HOM05D006924 ORTHO05D008218 2.8e-26 123.6 322 34.2
Pp3c19_15790 Physcomitrium patens HOM05D006924 ORTHO05D008218 3.7e-26 123.2 285 39.6
Mapoly0029s0145 Marchantia polymorpha HOM05D006924 ORTHO05D008218 4.1e-25 119.8 255 38.8
Atru.chr7.2280 Acer truncatum HOM05D006924 ORTHO05D008218 9.1e-25 118.6 116 57.8
SEGI_32810 Sequoiadendron giganteum HOM05D006924 ORTHO05D008218 6.1e-21 105.9 228 39.9
Haze_21544 Corylus avellana HOM05D006924 ORTHO05D008218 2.8e-18 97.1 56 85.7
Hma1.2p1_0000F.1_g000370 Hydrangea macrophylla HOM05D006924 ORTHO05D008218 3.7e-18 96.7 131 56.5
Nn2g11969 Nelumbo nucifera HOM05D006924 ORTHO05D008218 2.9e-15 87.0 180 40.6
TPR.G28713 Trifolium pratense HOM05D006924 ORTHO05D008218 6.1e-13 79.3 45 75.6
Atru.chr1.1063 Acer truncatum HOM05D006924 ORTHO05D008218 8.0e-13 79.0 86 54.7
C09p65600 Brassica napus HOM05D000552 ORTHO05D003270 7.5e-11 72.4 112 60.7
Psat5g000080 Pisum sativum HOM05D006924 ORTHO05D008218 4.1e-09 66.6 91 47.3
SMO367G1066 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 7.0e-09 65.9 54 51.9
AagrBONN_evm.TU.Sc2ySwM_368.1808 Anthoceros agrestis HOM05D006924 ORTHO05D008218 1.2e-08 65.1 130 34.6
TPR.G31762 Trifolium pratense HOM05D006924 ORTHO05D008218 3.8e-07 60.1 69 49.3
TAR626G1880 Trochodendron aralioides HOM05D006924 ORTHO05D008218 7.3e-06 55.8 127 52.0


User provided reference genes

Program Settings