Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013043 Carpinus fangiana HOM05D008192 ORTHO05D010301 1.8e-88 329.3 174 100.0
Haze_21404 Corylus avellana HOM05D008192 ORTHO05D010301 5.3e-77 291.2 174 90.8
QL02p018787 Quercus lobata HOM05D008192 ORTHO05D010301 1.2e-52 210.3 168 72.6
CiPaw.07G230700 Carya illinoinensis HOM05D008192 ORTHO05D010301 1.6e-33 146.7 163 59.5
Dinv08187 Davidia involucrata HOM05D008192 ORTHO05D010301 4.4e-31 138.7 171 53.8
Prupe.1G394700 Prunus persica HOM05D008192 ORTHO05D010301 6.3e-30 134.8 169 50.9
Duzib187G1399 Durio zibethinus HOM05D008192 ORTHO05D010301 5.9e-28 128.3 172 52.3
Duzib168G0610 Durio zibethinus HOM05D008192 ORTHO05D010301 1.2e-25 120.6 173 49.1
Ciclev10009717m.g Citrus clementina HOM05D008192 ORTHO05D010301 3.6e-25 119.0 169 50.9
CSS0005628 Camellia sinensis var. sinensis HOM05D008192 ORTHO05D010301 2.3e-24 116.3 177 46.9
CSS0017566 Camellia sinensis var. sinensis HOM05D008192 ORTHO05D010301 2.3e-24 116.3 177 46.9
Atru.chr7.2557 Acer truncatum HOM05D008192 ORTHO05D010301 1.5e-23 113.6 168 45.8
Actinidia10524 Actinidia chinensis HOM05D008192 ORTHO05D010301 1.7e-22 110.2 171 45.6
Hma1.2p1_0389F.1_g142520 Hydrangea macrophylla HOM05D008192 ORTHO05D010301 2.2e-22 109.8 172 47.7
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 2.2e-22 109.8 197 42.1
Hma1.2p1_1685F.1_g297470 Hydrangea macrophylla HOM05D008192 ORTHO05D010301 1.4e-21 107.1 172 47.1
MSTRG.11783 Avicennia marina HOM05D008192 ORTHO05D010301 4.1e-21 105.5 174 44.3
FvH4_2g41181 Fragaria vesca HOM05D008192 ORTHO05D010301 5.4e-21 105.1 172 41.9
Thecc.09G015000 Theobroma cacao HOM05D008192 ORTHO05D010301 1.2e-20 104.0 172 49.4
FAN15G3555 Fragaria x ananassa HOM05D002088 ORTHO05D002204 1.6e-20 103.6 172 41.3
GSVIVG01035976001 Vitis vinifera HOM05D008192 ORTHO05D010301 2.7e-20 102.8 187 46.5
FAN20G1545 Fragaria x ananassa HOM05D008192 ORTHO05D010301 1.3e-19 100.5 172 40.7
Gohir.A06G102100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 1.3e-19 100.5 171 45.6
RcHm_v2.0_Chr6g0299341 Rosa chinensis HOM05D008192 ORTHO05D010301 1.7e-19 100.1 173 41.0
Cpa.g.sc148.20 Carica papaya HOM05D008192 ORTHO05D010301 2.9e-19 99.4 175 41.7
Dinv13414 Davidia involucrata HOM05D008192 ORTHO05D010301 3.8e-19 99.0 115 53.0
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 3.8e-19 99.0 200 42.0
SalBow4G3126 Salvia bowleyana HOM05D008192 ORTHO05D010301 6.6e-19 98.2 169 45.0
Duzib150G1248 Durio zibethinus HOM05D008192 ORTHO05D010301 1.1e-18 97.4 172 46.5
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 1.9e-18 96.7 166 46.4
Migut.A00360 Erythranthe guttata HOM05D008192 ORTHO05D010301 7.3e-18 94.7 172 43.0
Oeu021912.1 Olea europaea HOM05D008192 ORTHO05D010301 9.5e-18 94.4 170 40.6
MD08G1055700 Malus domestica HOM05D008192 ORTHO05D010301 2.1e-17 93.2 171 41.5
Actinidia22286 Actinidia chinensis HOM05D008192 ORTHO05D010301 4.7e-17 92.0 108 50.9
Gorai.010G119200 Gossypium raimondii HOM05D008192 ORTHO05D010301 4.7e-17 92.0 171 44.4
Gohir.A05G060200 Gossypium hirsutum HOM05D008192 ORTHO05D010301 8.0e-17 91.3 172 43.0
Sabra06G0207000 Salix brachista HOM05D008192 ORTHO05D010301 1.4e-16 90.5 173 41.0
Gohir.D06G104100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 2.3e-16 89.7 171 43.9
CANSAT25G1276 Cannabis sativa HOM05D008192 ORTHO05D010301 5.2e-16 88.6 157 44.6
AUR62024800 Chenopodium quinoa HOM05D008192 ORTHO05D010301 8.9e-16 87.8 171 42.7
Gorai.009G063500 Gossypium raimondii HOM05D008192 ORTHO05D010301 4.4e-15 85.5 172 41.9
Oeu032512.1 Olea europaea HOM05D008192 ORTHO05D010301 4.4e-15 85.5 88 56.8
AUR62032421 Chenopodium quinoa HOM05D008192 ORTHO05D010301 9.8e-15 84.3 168 40.5
Cc04_g10610 Coffea canephora HOM05D008192 ORTHO05D010301 1.3e-14 84.0 172 40.1
Sc09g0010700 Simmondsia chinensis HOM05D008192 ORTHO05D010301 1.3e-14 84.0 169 42.6
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 2.2e-14 83.2 194 39.7
MD15G1041800 Malus domestica HOM05D008192 ORTHO05D010301 3.7e-14 82.4 112 46.4
EL10Ac2g02493 Beta vulgaris HOM05D008192 ORTHO05D010301 8.3e-14 81.3 167 40.7
Hund25618 Selenicereus undatus HOM05D008192 ORTHO05D010301 5.4e-13 78.6 154 39.6
FAN27G3331 Fragaria x ananassa HOM05D002088 ORTHO05D002204 9.2e-13 77.8 138 39.9
Ah.10g025590 Amaranthus hybridus HOM05D008192 ORTHO05D010301 1.6e-12 77.0 165 37.6
Solyc08g006760.4 Solanum lycopersicum HOM05D008192 ORTHO05D010301 2.7e-12 76.3 153 41.8
Sopen08g002700 Solanum pennellii HOM05D008192 ORTHO05D010301 3.5e-12 75.9 153 41.2
Peaxi162Scf00045g02027 Petunia axillaris HOM05D008192 ORTHO05D010301 1.0e-11 74.3 77 55.8
Nitab4.5_0000264g0200 Nicotiana tabacum HOM05D008192 ORTHO05D010301 1.3e-11 73.9 93 49.5
Potri.006G264900 Populus trichocarpa HOM05D008192 ORTHO05D010301 1.3e-11 73.9 77 54.5
CAN.G1198.1 Capsicum annuum HOM05D008192 ORTHO05D010301 3.0e-11 72.8 146 41.1
Glyma.17G223700 Glycine max HOM05D008192 ORTHO05D010301 3.9e-11 72.4 153 37.9
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 8.6e-11 71.2 124 41.1
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 8.6e-11 71.2 124 41.1
Hund02985 Selenicereus undatus HOM05D008192 ORTHO05D010301 2.5e-10 69.7 183 37.2
PGSC0003DMG400026278 Solanum tuberosum HOM05D008192 ORTHO05D010301 2.5e-10 69.7 130 42.3
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 7.3e-10 68.2 123 41.5
Lalb_Chr24g0401951 Lupinus albus HOM05D008192 ORTHO05D010301 9.5e-10 67.8 169 37.3
SGA_v2.0_scaffold147G36345 Striga asiatica HOM05D008192 ORTHO05D010301 9.5e-10 67.8 173 34.1
Peaxi162Scf01286g00122 Petunia axillaris HOM05D008192 ORTHO05D010301 2.1e-09 66.6 142 38.7
arahy.Tifrunner.gnm1.ann1.D8U9UB Arachis hypogaea HOM05D008192 ORTHO05D010301 4.7e-09 65.5 170 34.7
Manes.03G008000 Manihot esculenta HOM05D008192 ORTHO05D010301 4.7e-09 65.5 151 38.4
Nitab4.5_0010499g0010 Nicotiana tabacum HOM05D008192 ORTHO05D010301 6.2e-09 65.1 171 37.4
DCAR_022864 Daucus carota HOM05D008192 ORTHO05D010301 8.0e-09 64.7 94 43.6
Manes.16G130300 Manihot esculenta HOM05D008192 ORTHO05D010301 8.0e-09 64.7 57 64.9
Aqoxy7G03381 Aquilegia oxysepala HOM05D003759 ORTHO05D004149 1.1e-08 64.3 199 31.7
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 1.4e-08 63.9 201 34.8
Gohir.D05G062401 Gossypium hirsutum HOM05D008192 ORTHO05D010301 1.8e-08 63.5 91 46.2
Sed0007247 Sechium edule HOM05D008192 ORTHO05D010301 1.8e-08 63.5 74 52.7
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 4.0e-08 62.4 93 46.2
Sopen06g014330 Solanum pennellii HOM05D000014 ORTHO05D010301 5.2e-08 62.0 141 38.3
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 8.9e-08 61.2 205 34.1
Rhsim01G0028200 Rhododendron simsii HOM05D003759 ORTHO05D004149 1.2e-07 60.8 111 39.6
Dinv41366 Davidia involucrata HOM05D003759 ORTHO05D004149 2.0e-07 60.1 86 47.7
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 3.4e-07 59.3 122 35.2
Nitab4.5_0005869g0060 Nicotiana tabacum HOM05D003759 ORTHO05D004149 4.4e-07 58.9 93 43.0
Nitab4.5_0002891g0100 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.3e-06 57.4 114 39.5
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 1.3e-06 57.4 114 36.8
arahy.Tifrunner.gnm1.ann1.XVGB1U Arachis hypogaea HOM05D008192 ORTHO05D010301 1.7e-06 57.0 187 32.6
vmacro16796 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 2.2e-06 56.6 114 38.6
Actinidia01426 Actinidia chinensis HOM05D003759 ORTHO05D004149 2.9e-06 56.2 83 45.8
Nitab4.5_0001571g0070 Nicotiana tabacum HOM05D003759 ORTHO05D004149 3.7e-06 55.8 84 41.7
Potri.018G105300 Populus trichocarpa HOM05D003759 ORTHO05D004149 3.7e-06 55.8 105 37.1
Actinidia38317 Actinidia chinensis HOM05D003759 ORTHO05D004149 4.9e-06 55.5 123 38.2
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 4.9e-06 55.5 81 42.0
ATR0580G180 Amborella trichopoda HOM05D003759 ORTHO05D004149 6.4e-06 55.1 120 35.8
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 6.4e-06 55.1 92 43.5
CSS0036931 Camellia sinensis var. sinensis HOM05D003759 ORTHO05D004149 8.3e-06 54.7 60 50.0
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 8.3e-06 54.7 72 43.1
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 8.3e-06 54.7 102 37.3


User provided reference genes

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