Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012828 Carpinus fangiana HOM05D000074 ORTHO05D124840 8.0e-61 236.9 117 100.0
Haze_19875 Corylus avellana HOM05D000074 ORTHO05D000220 3.6e-21 105.1 99 63.6
Cfa016834 Carpinus fangiana HOM05D000074 ORTHO05D000220 1.0e-15 87.0 102 58.8
CiPaw.09G037000 Carya illinoinensis HOM05D000074 ORTHO05D000220 2.5e-14 82.4 102 52.0
TAR623G0278 Trochodendron aralioides HOM05D000074 ORTHO05D000220 3.7e-10 68.6 94 42.6
CAN.G219.3 Capsicum annuum HOM05D000074 ORTHO05D000220 5.4e-09 64.7 112 40.2
TAR633G2571 Trochodendron aralioides HOM05D000074 ORTHO05D000220 7.1e-09 64.3 94 41.5
PSO339G2762 Papaver somniferum HOM05D000074 ORTHO05D000220 2.1e-08 62.8 94 40.4
QL04p006338 Quercus lobata HOM05D000074 ORTHO05D000220 2.1e-08 62.8 112 36.6
PSO384G2315 Papaver somniferum HOM05D000074 ORTHO05D000220 2.7e-08 62.4 94 40.4
Solyc01g087210.3 Solanum lycopersicum HOM05D000074 ORTHO05D000220 4.6e-08 61.6 112 38.4
Sopen01g034270 Solanum pennellii HOM05D000074 ORTHO05D000220 4.6e-08 61.6 112 38.4
PGSC0003DMG400006799 Solanum tuberosum HOM05D000074 ORTHO05D000220 6.0e-08 61.2 112 38.4
PGR031G0561 Punica granatum HOM05D000074 ORTHO05D000220 7.8e-08 60.8 93 41.9
Atru.chr1.1071 Acer truncatum HOM05D000074 ORTHO05D000220 1.0e-07 60.5 85 43.5
Nn2g15366 Nelumbo nucifera HOM05D000074 ORTHO05D000220 1.0e-07 60.5 99 39.4
GSVIVG01032096001 Vitis vinifera HOM05D000074 ORTHO05D000220 1.0e-07 60.5 97 40.2
Atru.chr11.2624 Acer truncatum HOM05D000074 ORTHO05D000220 1.3e-07 60.1 112 37.5
Atru.chr11.2626 Acer truncatum HOM05D000074 ORTHO05D000220 1.3e-07 60.1 112 37.5
Ciclev10030723m.g Citrus clementina HOM05D000074 ORTHO05D000220 1.3e-07 60.1 94 40.4
Thecc.05G158100 Theobroma cacao HOM05D000074 ORTHO05D000220 1.3e-07 60.1 96 41.7
Dinv09353 Davidia involucrata HOM05D000074 ORTHO05D000220 1.7e-07 59.7 93 39.8
Sabra16G0057500 Salix brachista HOM05D000074 ORTHO05D000220 1.7e-07 59.7 92 42.4
CiPaw.13G005300 Carya illinoinensis HOM05D000074 ORTHO05D000220 2.3e-07 59.3 112 36.6
Eucgr.G03380 Eucalyptus grandis HOM05D000074 ORTHO05D000220 2.3e-07 59.3 99 38.4
Manes.10G142600 Manihot esculenta HOM05D000074 ORTHO05D000220 2.3e-07 59.3 94 42.6
Nitab4.5_0008778g0020 Nicotiana tabacum HOM05D000074 ORTHO05D000220 2.3e-07 59.3 112 38.4
Potri.009G060800 Populus trichocarpa HOM05D000074 ORTHO05D000220 2.3e-07 59.3 92 41.3
Sabra16G0163400 Salix brachista HOM05D000074 ORTHO05D000220 2.3e-07 59.3 94 40.4
GSVIVG01033297001 Vitis vinifera HOM05D000074 ORTHO05D000220 2.3e-07 59.3 116 34.5
ATR0332G027 Amborella trichopoda HOM05D000074 ORTHO05D000220 3.0e-07 58.9 113 38.1
Aqoxy2G00188 Aquilegia oxysepala HOM05D000074 ORTHO05D000220 3.0e-07 58.9 92 40.2
Cpa.g.c29394.1 Carica papaya HOM05D000074 ORTHO05D000220 3.0e-07 58.9 94 39.4
AUR62024431 Chenopodium quinoa HOM05D000074 ORTHO05D000220 3.0e-07 58.9 81 44.4
TWI73G1221 Tripterygium wilfordii HOM05D000074 ORTHO05D000220 3.0e-07 58.9 94 39.4
COL.COLO4_28227 Corchorus olitorius HOM05D000074 ORTHO05D000220 3.9e-07 58.5 99 42.4
Gohir.A02G108100 Gossypium hirsutum HOM05D000074 ORTHO05D000220 3.9e-07 58.5 96 39.6
PSO339G5037 Papaver somniferum HOM05D000074 ORTHO05D000220 5.1e-07 58.2 94 41.5
Dinv43442 Davidia involucrata HOM05D000074 ORTHO05D000220 6.6e-07 57.8 113 36.3
Nitab4.5_0023024g0010 Nicotiana tabacum HOM05D000074 ORTHO05D000220 6.6e-07 57.8 112 37.5
PSO384G0862 Papaver somniferum HOM05D000074 ORTHO05D000220 6.6e-07 57.8 94 41.5
Potri.001G266400 Populus trichocarpa HOM05D000074 ORTHO05D000220 1.1e-06 57.0 93 39.8
RcHm_v2.0_Chr1g0316091 Rosa chinensis HOM05D000074 ORTHO05D000220 1.1e-06 57.0 97 40.2
Ah.13g076390 Amaranthus hybridus HOM05D000037 ORTHO05D000648 1.5e-06 56.6 78 42.3
Cfa010768 Carpinus fangiana HOM05D000074 ORTHO05D000220 1.5e-06 56.6 112 36.6
Duzib128G0974 Durio zibethinus HOM05D000074 ORTHO05D000220 1.5e-06 56.6 115 39.1
Peaxi162Scf00953g00116 Petunia axillaris HOM05D000074 ORTHO05D000220 1.5e-06 56.6 97 40.2
Gohir.D03G068100 Gossypium hirsutum HOM05D000074 ORTHO05D000220 1.9e-06 56.2 96 38.5
Gorai.003G092600 Gossypium raimondii HOM05D000074 ORTHO05D000220 1.9e-06 56.2 96 38.5
Lj3g0001305 Lotus japonicus HOM05D000074 ORTHO05D000220 1.9e-06 56.2 94 40.4
Manes.09G023700 Manihot esculenta HOM05D000074 ORTHO05D000220 1.9e-06 56.2 82 42.7
Potri.016G054900 Populus trichocarpa HOM05D000074 ORTHO05D000220 1.9e-06 56.2 92 40.2
CANSAT80G1799 Cannabis sativa HOM05D000074 ORTHO05D000220 2.5e-06 55.8 94 40.4
Duzib138G0539 Durio zibethinus HOM05D000074 ORTHO05D000220 2.5e-06 55.8 94 37.2
Lalb_Chr25g0283051 Lupinus albus HOM05D000074 ORTHO05D000220 2.5e-06 55.8 94 37.2
MBI02_g05662_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 2.5e-06 55.8 113 36.3
Prupe.2G014300 Prunus persica HOM05D000074 ORTHO05D000220 2.5e-06 55.8 97 38.1
Sabra09G0044800 Salix brachista HOM05D000074 ORTHO05D000220 2.5e-06 55.8 94 38.3
TWI53G0830 Tripterygium wilfordii HOM05D000074 ORTHO05D000220 2.5e-06 55.8 94 38.3
HPP92_024874 Vanilla planifolia HOM05D000074 ORTHO05D000220 2.5e-06 55.8 98 41.8
CiPaw.14G000100 Carya illinoinensis HOM05D000074 ORTHO05D000220 3.3e-06 55.5 113 34.5
Lj3g0009245 Lotus japonicus HOM05D000074 ORTHO05D000220 3.3e-06 55.5 93 38.7
Thecc.01G410600 Theobroma cacao HOM05D000074 ORTHO05D000220 3.3e-06 55.5 112 34.8
CsaV3_4G011810 Cucumis sativus L. HOM05D000074 ORTHO05D000220 4.3e-06 55.1 76 44.7
FAN01G2573 Fragaria x ananassa HOM05D000074 ORTHO05D000220 4.3e-06 55.1 97 39.2
VMungo1080G1884 Vigna mungo HOM05D000074 ORTHO05D000220 4.3e-06 55.1 94 36.2
arahy.Tifrunner.gnm1.ann1.C1ELGE Arachis hypogaea HOM05D000074 ORTHO05D000220 5.6e-06 54.7 97 38.1
arahy.Tifrunner.gnm1.ann1.W0EE9C Arachis hypogaea HOM05D000074 ORTHO05D000220 5.6e-06 54.7 97 38.1
Haze_03203 Corylus avellana HOM05D000074 ORTHO05D000220 5.6e-06 54.7 112 35.7
Lalb_Chr19g0132221 Lupinus albus HOM05D000074 ORTHO05D000220 5.6e-06 54.7 94 38.3
PGR044G1869 Punica granatum HOM05D000074 ORTHO05D000220 5.6e-06 54.7 94 39.4
SEGI_35190 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 5.6e-06 54.7 110 36.4
vmacro16788 Vaccinium macrocarpon HOM05D000074 ORTHO05D000220 5.6e-06 54.7 96 38.5
EL10Ac3g07072 Beta vulgaris HOM05D000074 ORTHO05D000220 7.3e-06 54.3 81 39.5
Dinv42834 Davidia involucrata HOM05D000074 ORTHO05D000220 7.3e-06 54.3 111 37.8
Dinv43265 Davidia involucrata HOM05D000074 ORTHO05D000220 7.3e-06 54.3 111 37.8
Glyma.15G275000 Glycine max HOM05D000074 ORTHO05D000220 7.3e-06 54.3 106 32.1
MD07G1011100 Malus domestica HOM05D000074 ORTHO05D000220 7.3e-06 54.3 97 39.2
QL04p006380 Quercus lobata HOM05D000074 ORTHO05D000220 7.3e-06 54.3 112 35.7
SEGI_06860 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 7.3e-06 54.3 113 34.5
THA.LOC104819074 Tarenaya hassleriana HOM05D000074 ORTHO05D000220 7.3e-06 54.3 94 36.2
ClCG04G003280 Citrullus lanatus HOM05D000074 ORTHO05D000220 9.5e-06 53.9 79 43.0
FvH4_7g01100 Fragaria vesca HOM05D000074 ORTHO05D000220 9.5e-06 53.9 97 39.2
FAN06G0987 Fragaria x ananassa HOM05D000074 ORTHO05D000220 9.5e-06 53.9 97 39.2
Lalb_Chr20g0108011 Lupinus albus HOM05D000074 ORTHO05D000220 9.5e-06 53.9 113 34.5
Zm00001eb095350 Zea mays HOM05D000074 ORTHO05D000220 9.5e-06 53.9 114 33.3


User provided reference genes

Program Settings