Gene: COL.COLO4_28227

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_28227
  • Transcript Identifier COL.rna26948
  • Gene Type Coding gene
  • Location AWUE01019793.1 : 33096-43958 : positive

Gene Family Information

  • ID HOM05D000074
  • #Genes/#Species 3906/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna26948
  • GenBank OMO71473.1
  • id gene28199
  • gene_name COLO4_28227
  • uniprot A0A1R3HMF2

Descriptions

  • Description Glycoside hydrolase, family 28
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030244
IEA
GOA Databasecellulose biosynthetic process
GO:0030244
IEA
InterProcellulose biosynthetic process
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0008152
IEA
GOA Databasemetabolic process
GO:0071555
IEA
GOA Databasecell wall organization

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016760
IEA
GOA Databasecellulose synthase (UDP-forming) activity
GO:0016760
IEA
InterProcellulose synthase (UDP-forming) activity
GO:0004650
IEA
GOA Databasepolygalacturonase activity
GO:0004650
IEA
InterPropolygalacturonase activity
GO:0016757
IEA
GOA Databaseglycosyltransferase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005886
IEA
GOA Databaseplasma membrane
GO:0005618
IEA
GOA Databasecell wall

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011050 Pectin lyase fold/virulence factor
IPR006626 Parallel beta-helix repeat
IPR027934 Cellulose synthase, RING-type zinc finger
IPR000743 Glycoside hydrolase, family 28
IPR005150 Cellulose synthase
IPR012334 Pectin lyase fold
IPR029044 Nucleotide-diphospho-sugar transferases
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
21.1.1.1.1 Cell wall organisation.cellulose.cellulose synthase complex (CSC).CSC components.cellulose synthase (CesA)
21.3.5.1.1 Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.polygalacturonase (QRT2)