Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 2.6e-79 299.3 232 100.0
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 2.9e-46 189.5 216 85.6
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 6.0e-44 181.8 120 82.5
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 2.3e-35 153.3 219 76.3
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 6.7e-35 151.8 225 74.2
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 8.7e-35 151.4 217 71.9
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 1.1e-34 151.0 211 76.3
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 1.5e-34 150.6 212 78.3
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 3.3e-34 149.4 216 69.0
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 7.4e-34 148.3 210 75.7
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 2.1e-33 146.7 216 73.6
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 3.7e-33 146.0 220 72.3
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 4.8e-33 145.6 211 74.4
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 8.2e-33 144.8 214 73.4
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 8.2e-33 144.8 217 75.6
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 3.1e-32 142.9 210 70.5
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 3.1e-32 142.9 219 74.4
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 4.0e-32 142.5 212 70.3
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 4.0e-32 142.5 218 72.0
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 5.3e-32 142.1 212 75.5
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.2e-31 141.0 214 72.4
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 2.0e-31 140.2 213 76.5
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 2.6e-31 139.8 211 73.5
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 5.8e-31 138.7 213 73.2
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 5.8e-31 138.7 213 70.9
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 1.0e-30 137.9 213 74.2
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 1.0e-30 137.9 211 70.6
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 1.3e-30 137.5 214 59.8
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 1.3e-30 137.5 219 73.5
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 2.2e-30 136.7 213 71.8
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 2.2e-30 136.7 213 71.8
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 4.9e-30 135.6 219 67.1
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 6.5e-30 135.2 210 74.3
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 1.9e-29 133.7 224 63.8
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 5.5e-29 132.1 217 73.3
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 7.1e-29 131.7 215 72.6
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.2e-28 131.0 124 60.5
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 1.6e-28 130.6 216 69.9
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 2.7e-28 129.8 213 73.2
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 2.7e-28 129.8 217 68.2
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 3.5e-28 129.4 213 72.3
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 4.6e-28 129.0 220 63.6
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 4.6e-28 129.0 210 72.9
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 6.0e-28 128.6 209 43.5
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 6.0e-28 128.6 220 59.5
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 7.9e-28 128.3 123 57.7
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 1.8e-27 127.1 214 72.4
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 3.0e-27 126.3 212 71.2
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 3.9e-27 125.9 218 68.3
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 5.1e-27 125.6 219 73.1
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 5.1e-27 125.6 132 58.3
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 1.1e-26 124.4 218 72.5
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 1.1e-26 124.4 209 59.8
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 1.9e-26 123.6 217 68.7
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 1.9e-26 123.6 156 87.2
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.5e-26 123.2 230 68.7
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.5e-26 123.2 230 68.7
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 2.5e-26 123.2 223 70.4
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 3.3e-26 122.9 203 52.2
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 4.3e-26 122.5 71 90.1
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 1.3e-25 120.9 143 64.3
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 1.3e-25 120.9 220 66.8
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 2.8e-25 119.8 217 67.7
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 3.7e-25 119.4 217 68.7
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 4.8e-25 119.0 209 72.2
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 6.3e-25 118.6 217 66.8
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 6.3e-25 118.6 224 68.3
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 8.2e-25 118.2 216 69.4
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 1.1e-24 117.9 212 67.0
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 1.4e-24 117.5 222 65.8
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 2.4e-24 116.7 210 69.0
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 2.4e-24 116.7 216 68.5
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 4.1e-24 115.9 217 67.3
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 6.9e-24 115.2 205 68.8
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 1.2e-23 114.4 216 68.1
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 1.2e-23 114.4 216 67.6
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 2.6e-23 113.2 216 67.6
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 7.6e-23 111.7 225 51.6
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 1.7e-22 110.5 216 66.7
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 3.8e-22 109.4 216 66.7
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 3.8e-22 109.4 185 75.7
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 3.2e-21 106.3 244 63.1
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.2e-20 104.4 68 77.9
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.2e-20 104.4 71 77.5
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 2.7e-20 103.2 121 52.1
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 2.7e-20 103.2 155 78.7
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 3.6e-20 102.8 202 68.8
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 3.9e-19 99.4 151 68.2
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 1.9e-18 97.1 132 86.4
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 4.3e-18 95.9 132 87.9
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 1.3e-17 94.4 59 78.0
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 1.7e-17 94.0 163 65.6
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 4.8e-17 92.4 159 61.6
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.4e-16 90.9 129 74.4
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 3.4e-15 86.3 60 70.0
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 1.3e-14 84.3 156 60.3
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 3.2e-13 79.7 45 86.7
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 3.2e-13 79.7 177 64.4
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 1.6e-12 77.4 169 57.4
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.8e-11 73.9 117 81.2


User provided reference genes

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