Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012736 Carpinus fangiana HOM05D003894 ORTHO05D004584 2.1e-45 185.3 89 100.0
Haze_07897 Corylus avellana HOM05D003894 ORTHO05D004584 4.1e-41 171.0 89 91.0
CiPaw.12G051400 Carya illinoinensis HOM05D003894 ORTHO05D004584 1.8e-36 155.6 87 85.1
QL12p011698 Quercus lobata HOM05D003894 ORTHO05D004584 3.3e-35 151.4 87 82.8
CiPaw.11G080600 Carya illinoinensis HOM05D003894 ORTHO05D004584 2.0e-32 142.1 87 79.3
Hma1.2p1_0316F.1_g122980 Hydrangea macrophylla HOM05D003894 ORTHO05D004584 4.5e-32 141.0 87 75.9
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 2.9e-31 138.3 87 70.1
MD06G1056700 Malus domestica HOM05D003894 ORTHO05D004584 5.0e-31 137.5 88 75.0
Dinv39159 Davidia involucrata HOM05D003894 ORTHO05D004584 6.5e-31 137.1 88 73.9
Thecc.03G249300 Theobroma cacao HOM05D003894 ORTHO05D004584 8.5e-31 136.7 87 74.7
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 1.1e-30 136.3 87 72.4
Prupe.5G067100 Prunus persica HOM05D003894 ORTHO05D004584 1.1e-30 136.3 87 73.6
Duzib084G0486 Durio zibethinus HOM05D003894 ORTHO05D004584 1.5e-30 136.0 87 74.7
Manes.01G081900 Manihot esculenta HOM05D003894 ORTHO05D004584 1.5e-30 136.0 84 75.0
Atru.chr9.1291 Acer truncatum HOM05D003894 ORTHO05D004584 4.2e-30 134.4 85 75.3
vmacro00193 Vaccinium macrocarpon HOM05D003894 ORTHO05D004584 4.2e-30 134.4 87 71.3
Rhsim11G0023700 Rhododendron simsii HOM05D003894 ORTHO05D004584 7.2e-30 133.7 87 69.0
CSS0010253 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 9.4e-30 133.3 87 70.1
CSS0035779 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 9.4e-30 133.3 87 70.1
COL.COLO4_37151 Corchorus olitorius HOM05D003894 ORTHO05D004584 3.6e-29 131.3 87 71.3
Actinidia14416 Actinidia chinensis HOM05D003894 ORTHO05D004584 4.7e-29 131.0 87 71.3
CANSAT21G2005 Cannabis sativa HOM05D003894 ORTHO05D004584 4.7e-29 131.0 88 72.7
Gohir.A08G169100 Gossypium hirsutum HOM05D003894 ORTHO05D004584 6.1e-29 130.6 87 71.3
TWI81G0562 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 6.1e-29 130.6 88 73.9
Sed0006464 Sechium edule HOM05D003894 ORTHO05D004584 8.0e-29 130.2 87 69.0
CsaV3_3G002580 Cucumis sativus L. HOM05D003894 ORTHO05D004584 1.0e-28 129.8 87 69.0
Gohir.D08G187500 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.0e-28 129.8 87 70.1
Duzib205G0957 Durio zibethinus HOM05D003894 ORTHO05D004584 2.3e-28 128.6 85 72.9
GSVIVG01004722001 Vitis vinifera HOM05D003894 ORTHO05D004584 2.3e-28 128.6 90 68.9
MELO3C013927.2 Cucumis melo HOM05D003894 ORTHO05D004584 3.0e-28 128.3 87 67.8
ClCG10G002550 Citrullus lanatus HOM05D003894 ORTHO05D004584 1.2e-27 126.3 87 67.8
CSS0041030 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 1.5e-27 125.9 87 64.4
TWI60G0612 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 2.0e-27 125.6 88 71.6
Gorai.004G197200 Gossypium raimondii HOM05D003894 ORTHO05D004584 2.6e-27 125.2 87 69.0
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.3e-26 122.9 87 66.7
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 2.2e-26 122.1 87 66.7
Gohir.D03G163400 Gossypium hirsutum HOM05D003894 ORTHO05D004584 3.7e-26 121.3 87 66.7
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 3.7e-26 121.3 87 66.7
Cpa.g.sc29.176 Carica papaya HOM05D003894 ORTHO05D004584 5.3e-25 117.5 84 66.7
Sc22g0000940 Simmondsia chinensis HOM05D003894 ORTHO05D004584 5.3e-25 117.5 88 63.6
Migut.A01116 Erythranthe guttata HOM05D003894 ORTHO05D004584 9.1e-25 116.7 85 65.9
Oeu024051.1 Olea europaea HOM05D003894 ORTHO05D004584 1.2e-24 116.3 88 64.8
Oeu064622.1 Olea europaea HOM05D003894 ORTHO05D004584 1.6e-24 115.9 87 64.4
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 7.7e-24 113.6 88 63.6
FAN08G0890 Fragaria x ananassa HOM05D003894 ORTHO05D004584 7.7e-24 113.6 88 63.6
Nn6g33915 Nelumbo nucifera HOM05D003894 ORTHO05D004584 1.0e-23 113.2 87 63.2
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 1.0e-23 113.2 83 66.3
FvH4_5g19130 Fragaria vesca HOM05D003894 ORTHO05D004584 2.2e-23 112.1 88 63.6
FAN18G1468 Fragaria x ananassa HOM05D003894 ORTHO05D004584 2.2e-23 112.1 88 63.6
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 2.9e-23 111.7 88 62.5
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 2.9e-23 111.7 83 68.7
Cc08_g12260 Coffea canephora HOM05D003894 ORTHO05D004584 5.0e-23 110.9 89 64.0
arahy.Tifrunner.gnm1.ann1.HNG0SX Arachis hypogaea HOM05D003894 ORTHO05D004584 1.5e-22 109.4 87 65.5
MSTRG.12111 Avicennia marina HOM05D003894 ORTHO05D004584 1.5e-22 109.4 88 63.6
EL10Ac5g12379 Beta vulgaris HOM05D003894 ORTHO05D004584 2.5e-22 108.6 87 64.4
SGA_v2.0_scaffold104G30167 Striga asiatica HOM05D003894 ORTHO05D004584 2.5e-22 108.6 70 70.0
arahy.Tifrunner.gnm1.ann1.0BBG36 Arachis hypogaea HOM05D003894 ORTHO05D004584 3.2e-22 108.2 87 64.4
arahy.Tifrunner.gnm1.ann1.31006K Arachis hypogaea HOM05D003894 ORTHO05D004584 3.2e-22 108.2 87 65.5
arahy.Tifrunner.gnm1.ann1.HK0HI4 Arachis hypogaea HOM05D003894 ORTHO05D004584 3.2e-22 108.2 87 64.4
Hund14570 Selenicereus undatus HOM05D003894 ORTHO05D004584 4.2e-22 107.8 87 64.4
Phvul.002G057400 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 5.5e-22 107.5 67 76.1
Eucgr.D02094 Eucalyptus grandis HOM05D003894 ORTHO05D004584 7.2e-22 107.1 76 68.4
BcaC09g50466 Brassica carinata HOM05D003894 ORTHO05D004584 1.2e-21 106.3 91 61.5
C01p25110 Brassica napus HOM05D003894 ORTHO05D004584 1.2e-21 106.3 91 61.5
Carub.0008s0035 Capsella rubella HOM05D003894 ORTHO05D004584 2.1e-21 105.5 86 64.0
Sabra01G0134600 Salix brachista HOM05D003894 ORTHO05D004584 2.7e-21 105.1 77 67.5
A01p20010 Brassica napus HOM05D003894 ORTHO05D004584 3.6e-21 104.8 89 60.7
BolC1t02463H Brassica oleracea HOM05D003894 ORTHO05D004584 3.6e-21 104.8 91 60.4
BraA01t01924Z Brassica rapa HOM05D003894 ORTHO05D004584 3.6e-21 104.8 89 60.7
CARHR223970 Cardamine hirsuta HOM05D003894 ORTHO05D004584 3.6e-21 104.8 89 59.6
Sp7g16820 Schrenkiella parvula HOM05D003894 ORTHO05D004584 3.6e-21 104.8 89 60.7
Lalb_Chr16g0386751 Lupinus albus HOM05D003894 ORTHO05D004584 4.7e-21 104.4 88 61.4
Nitab4.5_0000618g0110 Nicotiana tabacum HOM05D003894 ORTHO05D004584 4.7e-21 104.4 76 67.1
Glyma.01G208000 Glycine max HOM05D003894 ORTHO05D004584 6.1e-21 104.0 90 60.0
AL7G37350 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 8.0e-21 103.6 66 72.7
AT4G17360 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 8.0e-21 103.6 89 60.7
Carub.0007s2405 Capsella rubella HOM05D003894 ORTHO05D004584 8.0e-21 103.6 66 72.7
Thhalv10025694m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 1.0e-20 103.2 89 59.6
SalBow6G6274 Salvia bowleyana HOM05D003894 ORTHO05D004584 1.0e-20 103.2 88 63.6
VMungo1215G1221 Vigna mungo HOM05D003894 ORTHO05D004584 1.0e-20 103.2 67 74.6
TPR.G18144 Trifolium pratense HOM05D003894 ORTHO05D004584 1.8e-20 102.4 85 61.2
Nitab4.5_0001381g0150 Nicotiana tabacum HOM05D003894 ORTHO05D004584 2.3e-20 102.1 90 56.7
Glyma.05G060500 Glycine max HOM05D003894 ORTHO05D004584 3.0e-20 101.7 50 92.0
Aa31LG6G100 Aethionema arabicum HOM05D003894 ORTHO05D004584 4.0e-20 101.3 90 61.1
Phvul.003G221600 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 4.0e-20 101.3 87 62.1
Lalb_Chr05g0214381 Lupinus albus HOM05D003894 ORTHO05D004584 5.2e-20 100.9 87 62.1
BcaNung00098 Brassica carinata HOM05D003894 ORTHO05D004584 6.8e-20 100.5 89 58.4
Lsat_1_v5_gn_3_1181 Lactuca sativa HOM05D003894 ORTHO05D004584 6.8e-20 100.5 87 56.3
Medtr5g012850 Medicago truncatula HOM05D003894 ORTHO05D004584 6.8e-20 100.5 55 80.0
Medtr7g016670 Medicago truncatula HOM05D003894 ORTHO05D004584 6.8e-20 100.5 86 59.3
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 8.8e-20 100.1 90 58.9
Ca_06903_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 1.2e-19 99.8 88 58.0
Lj4g0028027 Lotus japonicus HOM05D003894 ORTHO05D004584 1.2e-19 99.8 89 61.8
TPR.G23384 Trifolium pratense HOM05D003894 ORTHO05D004584 1.2e-19 99.8 64 75.0
AL8G10600 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 1.5e-19 99.4 65 72.3
AT5G47435 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 1.5e-19 99.4 65 72.3
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 1.5e-19 99.4 89 59.6
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 1.5e-19 99.4 89 59.6
Nitab4.5_0002289g0080 Nicotiana tabacum HOM05D003894 ORTHO05D004584 2.0e-19 99.0 78 61.5
CAN.G62.34 Capsicum annuum HOM05D003894 ORTHO05D004584 2.6e-19 98.6 86 59.3
Thhalv10000960m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 2.6e-19 98.6 62 74.2
Glyma.17G142800 Glycine max HOM05D003894 ORTHO05D004584 2.6e-19 98.6 50 90.0
BolC7t43649H Brassica oleracea HOM05D003894 ORTHO05D004584 3.4e-19 98.2 90 57.8
CARHR173940 Cardamine hirsuta HOM05D003894 ORTHO05D004584 3.4e-19 98.2 65 70.8
Solyc08g078490.4 Solanum lycopersicum HOM05D003894 ORTHO05D004584 3.4e-19 98.2 89 56.2
Cc04_g06480 Coffea canephora HOM05D003894 ORTHO05D004584 4.4e-19 97.8 59 72.9
VMungo0251G1668 Vigna mungo HOM05D003894 ORTHO05D004584 4.4e-19 97.8 76 64.5
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 7.5e-19 97.1 62 72.6
Sp2g12140 Schrenkiella parvula HOM05D003894 ORTHO05D004584 7.5e-19 97.1 85 56.5
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 7.5e-19 97.1 88 52.3
BcaC06g31388 Brassica carinata HOM05D003894 ORTHO05D004584 9.8e-19 96.7 92 55.4
C07p31050 Brassica napus HOM05D003894 ORTHO05D004584 9.8e-19 96.7 62 72.6
Cc00_g07750 Coffea canephora HOM05D003894 ORTHO05D004584 9.8e-19 96.7 57 77.2
Solyc06g060770.3 Solanum lycopersicum HOM05D003894 ORTHO05D004584 9.8e-19 96.7 86 58.1
Sopen06g020890 Solanum pennellii HOM05D003894 ORTHO05D004584 9.8e-19 96.7 86 58.1
Sopen08g026970 Solanum pennellii HOM05D003894 ORTHO05D004584 1.3e-18 96.3 89 55.1
PGSC0003DMG401011882 Solanum tuberosum HOM05D003894 ORTHO05D004584 1.3e-18 96.3 86 57.0
SGA_v2.0_scaffold199G41177 Striga asiatica HOM05D003894 ORTHO05D004584 1.3e-18 96.3 88 56.8
Glyma.11G034200 Glycine max HOM05D003894 ORTHO05D004584 2.2e-18 95.5 83 61.4
Ca_24586_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 2.8e-18 95.1 52 80.8
HanXRQChr08g0227781 Helianthus annuus HOM05D003894 ORTHO05D004584 2.8e-18 95.1 87 52.9
CAN.G1058.48 Capsicum annuum HOM05D003894 ORTHO05D004584 4.8e-18 94.4 90 53.3
Aqoxy7G00816 Aquilegia oxysepala HOM05D003894 ORTHO05D004584 6.3e-18 94.0 91 53.8
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 6.3e-18 94.0 81 60.5
CDE04G1229 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 1.1e-17 93.2 68 61.8
DCAR_008499 Daucus carota HOM05D003894 ORTHO05D004584 3.1e-17 91.7 97 51.5
ECA233G0588 Erigeron canadensis HOM05D003894 ORTHO05D004584 2.7e-16 88.6 53 73.6
CDE02G2221 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 5.9e-16 87.4 55 67.3
PSO170G4158 Papaver somniferum HOM05D003894 ORTHO05D004584 1.0e-15 86.7 54 68.5
DCAR_006838 Daucus carota HOM05D003894 ORTHO05D004584 2.9e-15 85.1 54 70.4
PSO017G7068 Papaver somniferum HOM05D003894 ORTHO05D004584 3.8e-15 84.7 47 76.6
Zm00001eb404490 Zea mays HOM05D003894 ORTHO05D004584 1.9e-14 82.4 57 64.9
ATR0317G052 Amborella trichopoda HOM05D003894 ORTHO05D004584 5.5e-14 80.9 68 58.8
SEGI_14746 Sequoiadendron giganteum HOM05D003894 ORTHO05D004584 4.4e-11 71.2 87 39.1
Nitab4.5_0001076g0020 Nicotiana tabacum HOM05D003894 ORTHO05D004584 2.2e-10 68.9 37 86.5
SMO146G0337 Selaginella moellendorffii HOM05D003894 ORTHO05D004584 3.7e-10 68.2 59 55.9
Pp3c2_3170 Physcomitrium patens HOM05D003894 ORTHO05D004584 3.5e-08 61.6 50 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1331 Anthoceros agrestis HOM05D003894 ORTHO05D004584 4.5e-08 61.2 54 51.9
Os03g0102100 Oryza sativa ssp. japonica HOM05D003894 ORTHO05D004584 1.0e-07 60.1 37 73.0
Pp3c14_22020 Physcomitrium patens HOM05D003894 ORTHO05D004584 5.0e-07 57.8 50 52.0
Pp3c1_39510 Physcomitrium patens HOM05D003894 ORTHO05D004584 5.0e-07 57.8 50 46.0


User provided reference genes

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