Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 0.0e+00 1893.6 949 100.0
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 0.0e+00 1750.3 991 90.9
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 0.0e+00 1441.8 965 77.5
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 0.0e+00 1429.1 963 77.8
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 0.0e+00 1246.9 826 78.1
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 0.0e+00 1201.8 977 65.0
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 0.0e+00 1169.8 982 64.2
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 0.0e+00 1150.6 974 63.9
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 0.0e+00 1144.8 980 63.6
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 0.0e+00 1144.4 983 63.6
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1142.5 980 63.6
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 0.0e+00 1138.6 980 63.2
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 0.0e+00 1130.2 979 61.6
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 0.0e+00 1127.1 977 62.6
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 0.0e+00 1126.3 975 63.1
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1126.3 987 63.0
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 0.0e+00 1113.6 976 61.1
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 0.0e+00 1109.4 970 60.0
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 0.0e+00 1106.3 975 60.6
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 0.0e+00 1101.3 903 65.1
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 0.0e+00 1101.3 978 60.9
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 0.0e+00 1100.9 976 60.5
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 0.0e+00 1093.6 935 61.1
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 0.0e+00 1092.8 926 64.3
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 0.0e+00 1092.8 970 62.0
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 0.0e+00 1090.5 978 59.8
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 0.0e+00 1089.3 946 62.4
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 0.0e+00 1085.5 978 61.2
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1083.9 1013 59.8
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 0.0e+00 1081.6 977 60.4
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 0.0e+00 1081.2 974 60.2
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 0.0e+00 1076.6 981 60.2
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 6.5e-312 1074.7 981 60.2
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 6.5e-312 1074.7 977 60.7
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.5e-311 1071.2 981 60.0
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 1.7e-310 1069.3 942 63.1
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 1.7e-310 1069.3 973 58.6
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 2.9e-310 1068.5 974 59.8
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.1e-309 1066.6 982 60.1
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 3.9e-307 1058.1 953 60.2
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 3.9e-307 1058.1 976 59.1
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 3.3e-306 1055.0 940 61.9
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 4.3e-306 1054.7 971 58.7
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 8.4e-302 1040.4 983 58.8
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 8.4e-302 1040.4 983 58.8
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.1e-301 1040.0 956 59.8
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 7.1e-301 1037.3 978 58.6
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 3.5e-300 1035.0 978 58.5
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 3.3e-298 1028.5 960 57.8
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.3e-297 1026.5 977 59.3
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 2.1e-297 1025.8 989 57.8
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 2.4e-296 1022.3 980 58.9
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.9e-296 1020.8 977 59.1
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 5.8e-295 1017.7 978 59.0
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 7.6e-295 1017.3 957 58.1
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.9e-294 1015.4 977 59.0
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.2e-292 1010.0 821 64.9
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 3.3e-290 1001.9 976 57.7
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 3.3e-290 1001.9 916 57.9
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 4.3e-290 1001.5 943 57.9
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 2.1e-289 999.2 957 55.9
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 2.8e-289 998.8 977 55.5
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 3.1e-288 995.3 1063 54.7
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 5.3e-288 994.6 964 58.5
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 5.3e-288 994.6 977 54.4
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 1.9e-285 986.1 987 55.5
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 2.7e-284 982.2 1005 55.1
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 3.0e-283 978.8 947 57.0
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 2.5e-282 975.7 946 57.0
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 1.3e-281 973.4 978 55.5
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 7.6e-279 964.1 961 56.2
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 2.7e-276 955.7 945 54.8
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 5.1e-275 951.4 944 54.8
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 4.3e-274 948.3 950 54.3
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 2.2e-273 946.0 937 55.0
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 3.1e-272 942.2 949 54.6
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 4.1e-272 941.8 961 56.1
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.1e-269 933.7 939 55.1
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 2.5e-269 932.6 880 56.4
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 6.1e-268 927.9 940 54.1
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 3.0e-267 925.6 940 53.9
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.3e-265 920.2 978 54.0
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 6.9e-264 914.4 933 53.9
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.3e-262 910.2 962 52.9
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 5.0e-262 908.3 956 54.1
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.9e-261 906.4 687 67.1
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 1.2e-260 903.7 940 53.4
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 9.7e-258 894.0 953 52.8
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 2.6e-255 885.9 954 52.2
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.0e-254 884.0 687 64.5
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 2.9e-254 882.5 949 52.8
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 1.5e-253 880.2 967 52.0
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 3.0e-251 872.5 968 51.9
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 3.3e-250 869.0 689 65.3
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.7e-249 865.5 994 50.9
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 3.1e-248 862.4 938 53.0
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 5.0e-246 855.1 990 50.9
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 7.2e-245 851.3 915 52.2
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 8.0e-244 847.8 804 57.8
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 5.2e-235 818.5 687 60.6
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 9.8e-234 814.3 933 50.5
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.0e-218 763.5 613 64.9
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 7.5e-218 761.5 710 57.6
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.4e-211 740.7 727 56.8
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 1.8e-211 740.3 916 48.1
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 7.8e-207 724.9 673 56.5
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 3.0e-206 723.0 662 56.9
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.1e-200 704.5 957 45.6
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 4.6e-199 699.1 925 47.6
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 7.3e-197 691.8 465 76.6
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 5.1e-182 642.5 772 46.2
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 6.7e-182 642.1 449 74.2
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 6.9e-179 632.1 793 46.8
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 4.6e-175 619.4 716 49.6
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.3e-165 586.6 709 49.6
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 3.8e-161 573.2 664 47.4
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 3.8e-161 573.2 687 47.6
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 7.2e-160 568.9 554 54.9
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 2.1e-159 567.4 855 42.3
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 5.1e-158 562.8 629 47.4
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 8.2e-148 528.9 733 45.3
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 3.1e-147 526.9 514 57.8
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 2.5e-136 490.7 695 42.2
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 4.5e-130 469.9 540 50.4
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 2.4e-123 447.6 741 36.6
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 8.0e-111 406.0 282 75.2
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 1.0e-110 405.6 286 72.7
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 3.9e-105 387.1 488 44.7
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 2.1e-95 354.8 432 48.4
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.0e-85 321.6 215 74.4
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 9.0e-78 296.2 216 69.9
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 6.4e-76 290.0 234 64.1
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.5e-69 268.9 250 59.6
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.6e-69 266.5 177 72.9
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 2.3e-65 255.0 243 52.3
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.0e-61 241.9 173 72.3
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 1.1e-54 219.5 148 71.6
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.4e-54 218.4 132 78.0
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 5.3e-54 217.2 275 48.4
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 3.0e-49 201.4 174 58.0
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.6e-42 179.1 312 40.1
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 3.6e-42 177.9 114 71.1
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 3.7e-39 167.9 299 42.1
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 5.5e-35 154.1 527 26.2
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 6.7e-33 147.1 198 48.0
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 7.0e-30 137.1 80 80.0
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 4.7e-26 124.4 311 31.5
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 1.4e-22 112.8 546 24.2
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 1.2e-16 93.2 78 55.1
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.8e-14 85.9 43 93.0
Cre16.g683437 Chlamydomonas reinhardtii HOM05D004501 ORTHO05D004944 4.7e-10 71.2 573 21.6
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 2.0e-08 65.9 47 59.6
GSVIVG01006141001 Vitis vinifera HOM05D004501 ORTHO05D004944 3.1e-06 58.5 64 48.4


User provided reference genes

Program Settings