Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012464 Carpinus fangiana HOM05D000043 ORTHO05D034067 5.3e-99 364.4 189 100.0
Cfa007387 Carpinus fangiana HOM05D000043 ORTHO05D034067 3.8e-36 155.6 99 91.9
Haze_20008 Corylus avellana HOM05D000043 ORTHO05D000600 9.9e-29 131.0 89 86.5
Cfa020152 Carpinus fangiana HOM05D000043 ORTHO05D000600 1.7e-28 130.2 70 95.7
CiPaw.10G025700 Carya illinoinensis HOM05D000043 ORTHO05D000600 6.7e-25 118.2 87 70.1
CiPaw.09G029300 Carya illinoinensis HOM05D000043 ORTHO05D000600 5.3e-22 108.6 89 61.8
Hma1.2p1_0431F.1_g151530 Hydrangea macrophylla HOM05D000043 ORTHO05D000600 6.9e-22 108.2 111 56.8
Dinv24060 Davidia involucrata HOM05D000043 ORTHO05D000600 2.0e-21 106.7 71 71.8
RcHm_v2.0_Chr3g0479331 Rosa chinensis HOM05D000043 ORTHO05D000600 2.2e-20 103.2 112 54.5
TAR633G2088 Trochodendron aralioides HOM05D000043 ORTHO05D000600 2.2e-20 103.2 131 49.6
QL07p024217 Quercus lobata HOM05D000043 ORTHO05D000600 2.9e-20 102.8 88 68.2
FAN02G0957 Fragaria x ananassa HOM05D000043 ORTHO05D000600 4.9e-20 102.1 71 70.4
FAN05G3512 Fragaria x ananassa HOM05D000043 ORTHO05D000600 4.9e-20 102.1 71 70.4
FAN09G3110 Fragaria x ananassa HOM05D000043 ORTHO05D000600 4.9e-20 102.1 71 70.4
MD12G1055700 Malus domestica HOM05D000043 ORTHO05D000600 6.4e-20 101.7 73 72.6
Prupe.7G079400 Prunus persica HOM05D000043 ORTHO05D000600 6.4e-20 101.7 73 72.6
FvH4_6g22040 Fragaria vesca HOM05D000043 ORTHO05D000600 1.1e-19 100.9 71 69.0
FAN14G1102 Fragaria x ananassa HOM05D000043 ORTHO05D000600 1.1e-19 100.9 71 69.0
Potri.006G193900 Populus trichocarpa HOM05D000043 ORTHO05D000600 1.9e-19 100.1 92 64.1
Manes.08G044000 Manihot esculenta HOM05D000043 ORTHO05D000600 4.2e-19 99.0 90 63.3
Manes.09G036800 Manihot esculenta HOM05D000043 ORTHO05D000600 5.5e-19 98.6 105 53.3
CsaV3_3G038690 Cucumis sativus L. HOM05D000043 ORTHO05D000600 7.1e-19 98.2 70 65.7
VMungo1383G1720 Vigna mungo HOM05D000043 ORTHO05D000600 1.6e-18 97.1 71 67.6
MSTRG.10849 Avicennia marina HOM05D000043 ORTHO05D000600 4.6e-18 95.5 137 43.8
Phvul.001G143600 Phaseolus vulgaris HOM05D000043 ORTHO05D000600 4.6e-18 95.5 71 67.6
ClCG10G017630 Citrullus lanatus HOM05D000043 ORTHO05D000600 6.0e-18 95.1 70 65.7
MELO3C009613.2 Cucumis melo HOM05D000043 ORTHO05D000600 7.9e-18 94.7 71 66.2
Sabra16G0062100 Salix brachista HOM05D000043 ORTHO05D000600 7.9e-18 94.7 74 70.3
Lj1g0013039 Lotus japonicus HOM05D000043 ORTHO05D000600 1.3e-17 94.0 69 63.8
Cc06_g15730 Coffea canephora HOM05D000043 ORTHO05D000600 3.9e-17 92.4 123 44.7
Atru.chr8.1146 Acer truncatum HOM05D000043 ORTHO05D000600 6.7e-17 91.7 68 67.6
Potri.016G059300 Populus trichocarpa HOM05D000043 ORTHO05D000600 6.7e-17 91.7 74 68.9
SalBow6G0255 Salvia bowleyana HOM05D000043 ORTHO05D000600 6.7e-17 91.7 109 51.4
TAR369G0126 Trochodendron aralioides HOM05D000043 ORTHO05D000600 6.7e-17 91.7 90 68.9
Glyma.19G149100 Glycine max HOM05D000043 ORTHO05D000600 3.3e-16 89.4 112 47.3
Thecc.05G174000 Theobroma cacao HOM05D000043 ORTHO05D000600 3.3e-16 89.4 72 65.3
TWI53G0430 Tripterygium wilfordii HOM05D000043 ORTHO05D000600 3.3e-16 89.4 115 49.6
Dinv14318 Davidia involucrata HOM05D000043 ORTHO05D000600 5.6e-16 88.6 69 65.2
Peaxi162Scf00480g00059 Petunia axillaris HOM05D000043 ORTHO05D000600 1.3e-15 87.4 90 55.6
Migut.J01848 Erythranthe guttata HOM05D000043 ORTHO05D000600 2.8e-15 86.3 89 53.9
Duzib106G1776 Durio zibethinus HOM05D000043 ORTHO05D000600 3.7e-15 85.9 90 58.9
CARHR206500 Cardamine hirsuta HOM05D000043 ORTHO05D000600 4.8e-15 85.5 109 46.8
Duzib093G1334 Durio zibethinus HOM05D000043 ORTHO05D000600 4.8e-15 85.5 90 57.8
MD14G1054900 Malus domestica HOM05D000043 ORTHO05D000600 4.8e-15 85.5 72 61.1
Nitab4.5_0002343g0030 Nicotiana tabacum HOM05D000043 ORTHO05D000600 6.2e-15 85.1 97 53.6
Solyc10g080550.2 Solanum lycopersicum HOM05D000043 ORTHO05D000600 8.2e-15 84.7 89 50.6
PGSC0003DMG400011446 Solanum tuberosum HOM05D000043 ORTHO05D000600 8.2e-15 84.7 106 54.7
Nitab4.5_0000105g0190 Nicotiana tabacum HOM05D000043 ORTHO05D000600 1.1e-14 84.3 153 43.1
PSO384G3361 Papaver somniferum HOM05D000043 ORTHO05D000600 1.4e-14 84.0 60 71.7
Duzib128G0967 Durio zibethinus HOM05D000043 ORTHO05D000600 1.8e-14 83.6 90 56.7
Nitab4.5_0001440g0080 Nicotiana tabacum HOM05D000043 ORTHO05D000600 1.8e-14 83.6 90 47.8
Rhsim03G0005100 Rhododendron simsii HOM05D000043 ORTHO05D000600 1.8e-14 83.6 67 61.2
Oeu006208.1 Olea europaea HOM05D000043 ORTHO05D000600 2.4e-14 83.2 109 49.5
Solyc10g078910.3 Solanum lycopersicum HOM05D000043 ORTHO05D000600 2.4e-14 83.2 106 51.9
CANSAT64G1695 Cannabis sativa HOM05D000043 ORTHO05D000600 4.0e-14 82.4 109 47.7
Gohir.D04G089700 Gossypium hirsutum HOM05D000043 ORTHO05D000600 4.0e-14 82.4 115 47.8
PSO339G0282 Papaver somniferum HOM05D000043 ORTHO05D000600 5.3e-14 82.0 60 71.7
TWI77G0891 Tripterygium wilfordii HOM05D000043 ORTHO05D000600 5.3e-14 82.0 63 61.9
Cpa.g.sc85.58 Carica papaya HOM05D000043 ORTHO05D034067 6.9e-14 81.6 73 61.6
DCAR_017035 Daucus carota HOM05D000043 ORTHO05D000600 6.9e-14 81.6 103 51.5
Glyma.09G109600 Glycine max HOM05D000043 ORTHO05D000600 6.9e-14 81.6 70 58.6
Sopen10g029530 Solanum pennellii HOM05D000043 ORTHO05D000600 6.9e-14 81.6 106 50.9
PGSC0003DMG400023668 Solanum tuberosum HOM05D000043 ORTHO05D000600 6.9e-14 81.6 89 50.6
Sopen10g031090 Solanum pennellii HOM05D000043 ORTHO05D000600 9.0e-14 81.3 129 40.3
TAR623G1596 Trochodendron aralioides HOM05D000043 ORTHO05D000600 1.2e-13 80.9 67 65.7
Atru.chr8.1145 Acer truncatum HOM05D000043 ORTHO05D000600 1.5e-13 80.5 59 67.8
AT5G06700 Arabidopsis thaliana HOM05D000043 ORTHO05D000600 1.5e-13 80.5 110 45.5
MSTRG.6489 Avicennia marina HOM05D000043 ORTHO05D000600 1.5e-13 80.5 99 47.5
Nitab4.5_0001079g0070 Nicotiana tabacum HOM05D000043 ORTHO05D000600 1.5e-13 80.5 90 46.7
PGR004G2511 Punica granatum HOM05D000043 ORTHO05D000600 1.5e-13 80.5 90 51.1
Sed0004395 Sechium edule HOM05D000043 ORTHO05D000600 2.0e-13 80.1 57 64.9
Gohir.A01G190700 Gossypium hirsutum HOM05D000043 ORTHO05D000600 3.4e-13 79.3 72 61.1
TPR.G30309 Trifolium pratense HOM05D000043 ORTHO05D000600 3.4e-13 79.3 89 52.8
Ca_12049_v3 Cicer arietinum L. HOM05D000043 ORTHO05D000600 4.5e-13 79.0 90 51.1
Gohir.A04G057500 Gossypium hirsutum HOM05D000043 ORTHO05D000600 4.5e-13 79.0 105 51.4
Nn2g15710 Nelumbo nucifera HOM05D000043 ORTHO05D000600 4.5e-13 79.0 77 63.6
Sp6g36160 Schrenkiella parvula HOM05D000043 ORTHO05D000600 4.5e-13 79.0 114 43.0
Aqoxy1G00132 Aquilegia oxysepala HOM05D000043 ORTHO05D000600 5.8e-13 78.6 92 62.0
Thhalv10012993m.g Eutrema salsugineum HOM05D000043 ORTHO05D000600 5.8e-13 78.6 93 48.4
SGA_v2.0_scaffold69G23057 Striga asiatica HOM05D000043 ORTHO05D000600 5.8e-13 78.6 88 47.7
Gorai.002G223800 Gossypium raimondii HOM05D000043 ORTHO05D000600 7.6e-13 78.2 72 59.7
TWI74G0898 Tripterygium wilfordii HOM05D000043 ORTHO05D000600 7.6e-13 78.2 121 43.8
Actinidia17281 Actinidia chinensis HOM05D000043 ORTHO05D000600 1.0e-12 77.8 110 45.5
Carub.0006s0558 Capsella rubella HOM05D000043 ORTHO05D000600 1.0e-12 77.8 72 54.2
Glyma.03G145900 Glycine max HOM05D000043 ORTHO05D000600 1.0e-12 77.8 89 51.7
SalBow1G2198 Salvia bowleyana HOM05D000043 ORTHO05D000600 1.0e-12 77.8 113 43.4
SalBow1G3471 Salvia bowleyana HOM05D000043 ORTHO05D000600 1.0e-12 77.8 113 43.4
SGA_v2.0_scaffold105G30496 Striga asiatica HOM05D000043 ORTHO05D000600 1.0e-12 77.8 111 45.9
arahy.Tifrunner.gnm1.ann1.2WDS0D Arachis hypogaea HOM05D000043 ORTHO05D000600 1.3e-12 77.4 94 51.1
arahy.Tifrunner.gnm1.ann1.47YT22 Arachis hypogaea HOM05D000043 ORTHO05D000600 1.3e-12 77.4 94 51.1
Gohir.D01G179000 Gossypium hirsutum HOM05D000043 ORTHO05D000600 1.7e-12 77.0 105 48.6
Lalb_Chr18g0047971 Lupinus albus HOM05D000043 ORTHO05D000600 1.7e-12 77.0 89 51.7
AL6G16790 Arabidopsis lyrata HOM05D000043 ORTHO05D000600 2.2e-12 76.6 111 44.1
VMungo0720G2403 Vigna mungo HOM05D000043 ORTHO05D000600 2.2e-12 76.6 70 57.1
Lalb_Chr15g0079041 Lupinus albus HOM05D000043 ORTHO05D000600 2.9e-12 76.3 111 43.2
Phvul.007G261000 Phaseolus vulgaris HOM05D000043 ORTHO05D000600 2.9e-12 76.3 70 60.0
BcaC06g32552 Brassica carinata HOM05D000043 ORTHO05D000600 3.8e-12 75.9 112 42.9
Gorai.012G100000 Gossypium raimondii HOM05D000043 ORTHO05D000600 3.8e-12 75.9 105 50.5
C09p70060 Brassica napus HOM05D000043 ORTHO05D000600 6.5e-12 75.1 114 43.0
Ca_08531_v3 Cicer arietinum L. HOM05D000043 ORTHO05D000600 6.5e-12 75.1 74 56.8
BolC9t59749H Brassica oleracea HOM05D000043 ORTHO05D000600 8.4e-12 74.7 113 43.4
DCAR_013657 Daucus carota HOM05D000043 ORTHO05D000600 8.4e-12 74.7 67 55.2
BcaC06g32386 Brassica carinata HOM05D000043 ORTHO05D000600 1.1e-11 74.3 114 43.0
Aa31sc40G50 Aethionema arabicum HOM05D000043 ORTHO05D000600 1.9e-11 73.6 92 44.6
BcaB01g05998 Brassica carinata HOM05D000043 ORTHO05D000600 1.9e-11 73.6 75 48.0
CSS0005605 Camellia sinensis var. sinensis HOM05D000043 ORTHO05D000600 1.9e-11 73.6 55 65.5
HanXRQChr10g0289911 Helianthus annuus HOM05D000043 ORTHO05D000600 1.9e-11 73.6 71 53.5
Nn7g35990 Nelumbo nucifera HOM05D000043 ORTHO05D000600 1.9e-11 73.6 70 62.9
THA.LOC104826773 Tarenaya hassleriana HOM05D000043 ORTHO05D000600 2.5e-11 73.2 114 43.0
Lj2C365T3 Lonicera japonica HOM05D000043 ORTHO05D000600 3.2e-11 72.8 60 66.7
BraA10t45010Z Brassica rapa HOM05D000043 ORTHO05D000600 4.2e-11 72.4 111 42.3
Medtr0136s0010 Medicago truncatula HOM05D000043 ORTHO05D000600 4.2e-11 72.4 71 53.5
A10p29690 Brassica napus HOM05D000043 ORTHO05D000600 1.2e-10 70.9 111 41.4
C03p03230 Brassica napus HOM05D000043 ORTHO05D000600 1.2e-10 70.9 73 47.9
BolC3t12867H Brassica oleracea HOM05D000043 ORTHO05D000600 1.2e-10 70.9 73 47.9
MBI13_g20489_MAGBIO Magnolia biondii HOM05D000043 ORTHO05D000600 1.2e-10 70.9 118 41.5
MBI19_g23206_MAGBIO Magnolia biondii HOM05D000043 ORTHO05D000600 1.2e-10 70.9 90 52.2
Glyma.02G171200 Glycine max HOM05D000043 ORTHO05D000600 1.6e-10 70.5 73 52.1
Hund24797 Selenicereus undatus HOM05D000043 ORTHO05D000600 1.3e-09 67.4 93 46.2
A03p02830 Brassica napus HOM05D000043 ORTHO05D000600 1.8e-09 67.0 71 46.5
BraA03t09646Z Brassica rapa HOM05D000043 ORTHO05D000600 1.8e-09 67.0 71 46.5
Ciclev10011263m.g Citrus clementina HOM05D000043 ORTHO05D000600 1.8e-09 67.0 70 55.7
Sed0027698 Sechium edule HOM05D000043 ORTHO05D000600 1.8e-09 67.0 69 53.6
Rhsim04G0096000 Rhododendron simsii HOM05D000043 ORTHO05D000600 3.0e-09 66.2 71 50.7
THA.LOC104799290 Tarenaya hassleriana HOM05D000043 ORTHO05D000600 3.0e-09 66.2 117 43.6
SHI15920 Sapria himalayana HOM05D000043 ORTHO05D000600 3.9e-09 65.9 81 48.1
Eucgr.A02463 Eucalyptus grandis HOM05D000043 ORTHO05D000600 6.7e-09 65.1 76 53.9
Peaxi162Scf00003g04538 Petunia axillaris HOM05D000043 ORTHO05D000600 1.1e-08 64.3 98 44.9
Aa31sc40G60 Aethionema arabicum HOM05D000043 ORTHO05D000600 9.7e-08 61.2 71 46.5
BraA01t04143Z Brassica rapa HOM05D000043 ORTHO05D000600 2.2e-07 60.1 64 48.4
Medtr7g093450 Medicago truncatula HOM05D000043 ORTHO05D000600 2.2e-07 60.1 79 43.0
Psat3g067800 Pisum sativum HOM05D000043 ORTHO05D000600 2.8e-07 59.7 81 45.7
TPR.G18217 Trifolium pratense HOM05D000043 ORTHO05D000600 2.8e-07 59.7 61 50.8
CARHR086630 Cardamine hirsuta HOM05D000043 ORTHO05D000600 1.1e-06 57.8 60 48.3
BraA02t04890Z Brassica rapa HOM05D000043 ORTHO05D000600 1.8e-06 57.0 102 37.3
BolC1t05269H Brassica oleracea HOM05D000043 ORTHO05D000600 3.1e-06 56.2 65 47.7
BcaB05g21653 Brassica carinata HOM05D000043 ORTHO05D000600 5.3e-06 55.5 71 43.7
BraA05t22524Z Brassica rapa HOM05D000043 ORTHO05D000600 5.3e-06 55.5 62 46.8


User provided reference genes

Program Settings