Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 3343.9 1685 100.0
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 2637.8 1901 73.2
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 2314.7 1697 70.1
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 2313.1 1696 70.9
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 2289.2 1695 70.1
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 2263.8 1696 69.3
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 2261.9 1686 67.4
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 2240.7 1691 68.4
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 2227.2 1699 67.7
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 2214.5 1694 68.7
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 2213.0 1715 67.3
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 2206.8 1695 67.6
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 2184.1 1697 67.2
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 2121.3 1704 64.6
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 2097.8 1721 63.9
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 2072.0 1703 64.4
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 2068.9 1703 64.5
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 2048.1 1694 63.9
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 2047.7 1518 69.8
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 2030.0 1663 63.9
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 2029.6 1694 63.6
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 2021.5 1694 62.6
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 2018.0 1669 63.2
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 2014.2 1681 62.8
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1997.2 1550 66.3
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1996.9 1686 62.8
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1984.1 1660 62.7
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1982.2 1692 61.7
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1947.9 1687 60.7
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1946.4 1683 60.8
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1927.1 1670 61.1
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1914.8 1727 59.9
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1906.0 1696 60.6
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1897.5 1698 59.3
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1896.7 1651 59.8
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1890.2 1651 59.6
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1885.9 1692 59.2
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1882.5 1692 60.0
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1880.9 1675 59.5
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1877.1 1649 59.3
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1872.4 1692 59.8
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1865.9 1695 59.5
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1864.7 1730 58.7
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1859.7 1682 59.5
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1846.6 1690 57.5
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1845.5 1558 62.3
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1844.7 1695 57.4
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1842.8 1677 58.5
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1826.2 1699 57.7
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1823.5 1696 57.8
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1819.7 1693 57.0
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1816.6 1662 58.1
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1813.9 1670 58.2
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1812.7 1663 57.9
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1808.9 1663 57.8
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1808.5 1696 57.7
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1803.5 1684 57.3
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1793.5 1697 57.3
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1791.9 1680 56.2
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1790.0 1660 57.7
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1786.2 1505 63.8
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1765.0 1665 55.8
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1761.9 1685 57.3
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1756.1 1593 57.4
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1732.2 1662 55.9
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1719.9 1658 56.1
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1705.3 1653 55.6
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1704.5 1687 55.0
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1674.1 1369 63.9
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1667.5 1556 56.5
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 1612.4 1022 80.6
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1605.9 1663 53.2
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1575.5 1143 70.4
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1502.6 1670 50.4
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 1471.1 1632 50.1
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 1463.7 1256 61.0
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 1433.7 1238 61.1
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 0.0e+00 1306.2 1066 65.7
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1278.1 1260 55.7
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 0.0e+00 1194.9 1312 51.8
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1167.1 1695 42.5
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 0.0e+00 1134.0 1201 51.3
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.8e-307 1060.1 957 59.4
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 8.7e-302 1041.2 1719 37.6
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 5.0e-297 1025.4 1040 55.4
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 5.0e-281 972.2 796 63.4
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 3.2e-280 969.5 924 57.6
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 3.3e-277 959.5 1489 41.4
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 9.1e-275 951.4 808 64.1
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 2.3e-238 830.5 516 84.3
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 8.4e-220 768.8 750 58.8
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 4.5e-197 693.3 1357 35.4
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 1.2e-186 658.7 474 74.9
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 4.6e-178 630.2 346 96.0
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 3.2e-171 607.4 309 96.8
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 5.3e-166 590.1 312 97.8
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 1.5e-163 582.0 408 72.5
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 2.8e-159 567.8 411 70.8
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 4.4e-152 543.9 1382 30.8
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 2.0e-144 518.5 432 65.7
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 3.4e-144 517.7 254 97.6
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 2.4e-142 511.5 395 67.8
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.5e-139 502.3 408 65.0
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.7e-135 487.6 620 45.5
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 5.0e-124 450.7 334 68.3
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 3.4e-120 438.0 416 54.1
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.1e-115 422.9 558 44.1
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 8.6e-108 396.7 292 70.5
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 1.1e-97 363.2 311 62.1
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.2e-87 328.9 401 43.9
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 4.8e-82 311.2 305 53.1
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 2.3e-76 292.4 179 82.1
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 3.3e-75 288.5 180 78.9
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.3e-74 286.6 407 39.6
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 4.8e-74 284.6 214 68.7
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 5.3e-73 281.2 389 41.6
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 5.3e-73 281.2 606 35.1
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 3.2e-70 271.9 561 31.7
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.2e-70 271.9 292 50.3
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.5e-56 226.5 186 64.5
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 3.8e-55 221.9 178 60.1
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 5.0e-55 221.5 137 77.4
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 1.2e-53 216.9 842 26.5
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.9e-52 211.8 318 41.5
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 3.3e-51 208.8 743 25.6
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 9.7e-51 207.2 880 25.1
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 2.8e-50 205.7 399 36.3
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 3.7e-50 205.3 431 36.2
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 4.1e-49 201.8 142 69.7
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 7.7e-48 197.6 108 87.0
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 4.2e-46 191.8 112 86.6
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.0e-39 170.6 154 63.0
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 1.0e-39 170.6 210 45.2
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 1.2e-35 157.1 97 76.3
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 7.5e-35 154.5 138 57.2
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 3.7e-34 152.1 148 55.4
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 2.4e-33 149.4 211 38.9
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 1.3e-31 143.7 151 45.0
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.6e-29 136.7 180 46.7
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 3.0e-28 132.5 85 77.6
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 6.8e-28 131.3 85 75.3
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 5.7e-27 128.3 136 52.2
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 5.7e-27 128.3 131 53.4
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.7e-26 125.6 82 74.4
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 1.1e-25 124.0 82 74.4
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.4e-25 123.6 82 74.4
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.5e-24 119.0 132 50.8
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.3e-23 117.1 74 75.7
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 2.1e-21 109.8 82 65.9
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.0e-20 107.5 157 39.5
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 2.3e-20 106.3 55 92.7
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 1.8e-17 96.7 135 43.0
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 2.0e-16 93.2 170 38.2
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 3.9e-15 89.0 148 38.5
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 5.0e-15 88.6 62 69.4
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 1.1e-14 87.4 70 65.7
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 9.5e-14 84.3 125 44.0
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 1.6e-13 83.6 184 33.7
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 2.1e-13 83.2 70 64.3
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 6.8e-12 78.2 62 62.9
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 2.0e-11 76.6 52 75.0
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 2.0e-11 76.6 52 75.0
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 2.0e-11 76.6 52 75.0
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 1.3e-10 73.9 48 77.1
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 6.4e-10 71.6 158 31.6
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 1.9e-09 70.1 169 30.8
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 1.9e-09 70.1 63 55.6
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 3.2e-09 69.3 143 32.2
BcaNung07323 Brassica carinata HOM05D003893 ORTHO05D005167 6.0e-08 65.1 63 55.6
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.0e-07 64.3 176 26.7
BolC6t38634H Brassica oleracea HOM05D003893 ORTHO05D021800 1.7e-07 63.5 152 30.9
Psat1g032760 Pisum sativum HOM05D003893 ORTHO05D005167 5.0e-07 62.0 54 59.3
SEGI_26572 Sequoiadendron giganteum HOM05D003893 ORTHO05D011582 6.6e-07 61.6 142 34.5


User provided reference genes

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