Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 2.1e-51 205.3 97 100.0
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.6e-43 179.1 95 90.5
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 4.9e-40 167.5 94 86.2
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 4.9e-40 167.5 94 86.2
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 1.6e-38 162.5 94 85.1
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 4.6e-38 161.0 94 81.9
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 1.0e-37 159.8 94 83.0
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.3e-37 159.5 94 79.8
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 8.7e-37 156.8 94 78.7
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 8.7e-37 156.8 94 79.8
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 8.7e-37 156.8 94 76.6
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.1e-36 156.4 94 77.7
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 1.9e-36 155.6 94 80.9
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 2.5e-36 155.2 94 83.0
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 3.3e-36 154.8 94 78.7
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 7.3e-36 153.7 133 61.7
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 1.6e-35 152.5 94 77.7
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.1e-35 152.1 94 79.8
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 2.1e-35 152.1 94 79.8
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 3.6e-35 151.4 94 77.7
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 4.8e-35 151.0 94 79.8
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 8.1e-35 150.2 94 80.9
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 8.1e-35 150.2 94 76.6
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 1.1e-34 149.8 94 77.7
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 1.1e-34 149.8 94 76.6
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 1.4e-34 149.4 94 77.7
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 1.4e-34 149.4 94 77.7
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.8e-34 149.1 94 77.7
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 1.8e-34 149.1 94 76.6
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 1.8e-34 149.1 94 78.7
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 4.0e-34 147.9 94 76.6
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 5.3e-34 147.5 94 75.5
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 5.3e-34 147.5 94 74.5
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 5.3e-34 147.5 94 76.6
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 9.0e-34 146.7 94 77.7
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 1.2e-33 146.4 94 76.6
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 2.6e-33 145.2 94 73.4
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 9.9e-33 143.3 94 73.4
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.2e-32 142.1 94 72.3
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.2e-32 142.1 94 72.3
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.2e-32 142.1 94 72.3
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.2e-32 142.1 94 75.5
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 2.2e-32 142.1 94 73.4
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 2.9e-32 141.7 98 71.4
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 6.4e-32 140.6 94 75.5
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 8.4e-32 140.2 96 74.0
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 8.4e-32 140.2 94 72.3
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 8.4e-32 140.2 94 72.3
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 8.4e-32 140.2 94 72.3
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 1.4e-31 139.4 94 73.4
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 1.9e-31 139.0 94 70.2
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 1.9e-31 139.0 94 71.3
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 2.4e-31 138.7 94 74.5
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 3.2e-31 138.3 94 75.5
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 4.2e-31 137.9 94 75.5
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 7.1e-31 137.1 94 73.4
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 9.3e-31 136.7 93 71.0
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 1.6e-30 136.0 94 73.4
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 1.6e-30 136.0 94 73.4
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 1.6e-30 136.0 94 73.4
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 1.6e-30 136.0 94 73.4
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 1.6e-30 136.0 94 73.4
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 2.1e-30 135.6 89 76.4
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 3.5e-30 134.8 94 73.4
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 4.6e-30 134.4 94 71.3
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 1.3e-29 132.9 94 72.3
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 1.3e-29 132.9 143 52.4
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 2.3e-29 132.1 68 92.6
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 6.7e-29 130.6 94 68.1
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 1.5e-28 129.4 94 66.0
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 1.5e-28 129.4 92 69.6
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 1.9e-28 129.0 92 69.6
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.9e-28 129.0 95 67.4
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 2.5e-28 128.6 94 70.2
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 2.5e-28 128.6 95 69.5
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 5.6e-28 127.5 94 69.1
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 5.6e-28 127.5 103 63.1
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 9.6e-28 126.7 69 87.0
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 9.6e-28 126.7 93 67.7
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 1.4e-26 122.9 95 67.4
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 4.0e-26 121.3 69 81.2
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 6.9e-26 120.6 77 77.9
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 9.0e-26 120.2 94 61.7
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.2e-25 119.8 78 69.2
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 2.0e-25 119.0 90 65.6
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 9.9e-25 116.7 94 68.1
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 9.3e-23 110.2 165 41.8
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 1.6e-22 109.4 94 58.5
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 6.0e-22 107.5 96 62.5
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 1.3e-21 106.3 93 62.4
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 1.8e-21 105.9 94 61.7
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 1.5e-20 102.8 65 78.5
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 2.5e-20 102.1 50 88.0
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 9.6e-20 100.1 95 57.9
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 1.6e-19 99.4 66 75.8
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 1.8e-18 95.9 49 89.8
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 4.0e-18 94.7 68 64.7
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 5.3e-18 94.4 49 83.7
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 4.5e-17 91.3 54 77.8
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 1.0e-16 90.1 65 70.8
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 6.5e-16 87.4 68 69.1
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 5.5e-15 84.3 49 69.4
Haze_08759 Corylus avellana HOM05D007428 ORTHO05D009308 2.6e-09 65.5 28 96.4
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 3.8e-08 61.6 46 69.6
HanXRQChr17g0533231 Helianthus annuus HOM05D007428 ORTHO05D009308 7.2e-07 57.4 60 56.7
Ca_08439_v3 Cicer arietinum L. HOM05D007428 ORTHO05D009308 9.3e-07 57.0 61 52.5
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 1.2e-06 56.6 46 67.4


User provided reference genes

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