Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012229 Carpinus fangiana HOM05D065004 ORTHO05D002520 9.1e-96 353.6 183 100.0
Cfa017592 Carpinus fangiana HOM05D065004 ORTHO05D002520 4.5e-26 122.1 81 85.2
Haze_12234 Corylus avellana HOM05D000225 ORTHO05D002520 2.3e-22 109.8 87 65.5
TWI39G0501 Tripterygium wilfordii HOM05D000225 ORTHO05D002520 1.2e-15 87.4 80 57.5
DCAR_005851 Daucus carota HOM05D000225 ORTHO05D002520 2.7e-15 86.3 79 57.0
DCAR_026528 Daucus carota HOM05D000740 ORTHO05D003236 7.9e-15 84.7 75 57.3
Atru.chr9.2548 Acer truncatum HOM05D000225 ORTHO05D002520 1.0e-14 84.3 80 56.2
Dinv24806 Davidia involucrata HOM05D000225 ORTHO05D002520 3.9e-14 82.4 75 57.3
Eucgr.H02518 Eucalyptus grandis HOM05D000225 ORTHO05D002520 8.7e-14 81.3 72 56.9
Manes.06G108500 Manihot esculenta HOM05D000225 ORTHO05D002520 1.5e-13 80.5 77 55.8
GSVIVG01004091001 Vitis vinifera HOM05D000225 ORTHO05D002520 3.3e-13 79.3 80 52.5
TAR371G0870 Trochodendron aralioides HOM05D000225 ORTHO05D002520 4.3e-13 79.0 79 55.7
Oeu059915.1 Olea europaea HOM05D000225 ORTHO05D002520 5.7e-13 78.6 75 56.0
Ciclev10033617m.g Citrus clementina HOM05D000225 ORTHO05D002520 7.4e-13 78.2 72 55.6
Haze_08781 Corylus avellana HOM05D000225 ORTHO05D002520 7.4e-13 78.2 38 94.7
Hma1.2p1_0223F.1_g094140 Hydrangea macrophylla HOM05D000225 ORTHO05D002520 7.4e-13 78.2 133 37.6
Solyc06g069610.1 Solanum lycopersicum HOM05D000225 ORTHO05D002520 7.4e-13 78.2 73 54.8
Sopen06g026910 Solanum pennellii HOM05D000225 ORTHO05D002520 7.4e-13 78.2 73 54.8
CANSAT01G1082 Cannabis sativa HOM05D000225 ORTHO05D002520 2.2e-12 76.6 79 51.9
Cc11_g15550 Coffea canephora HOM05D000225 ORTHO05D002520 2.2e-12 76.6 75 54.7
Lsat_1_v5_gn_3_28821 Lactuca sativa HOM05D000225 ORTHO05D002520 3.7e-12 75.9 79 50.6
Lj6A811T76 Lonicera japonica HOM05D000225 ORTHO05D002520 8.2e-12 74.7 66 59.1
Thecc.03G022500 Theobroma cacao HOM05D000225 ORTHO05D002520 8.2e-12 74.7 80 47.5
TAR629G3395 Trochodendron aralioides HOM05D000225 ORTHO05D002520 1.1e-11 74.3 83 53.0
CSS0023507 Camellia sinensis var. sinensis HOM05D000225 ORTHO05D002520 1.4e-11 73.9 75 54.7
Duzib251G0491 Durio zibethinus HOM05D000225 ORTHO05D002520 1.4e-11 73.9 72 52.8
Nitab4.5_0006673g0100 Nicotiana tabacum HOM05D000225 ORTHO05D002520 1.4e-11 73.9 69 53.6
Prupe.1G247900 Prunus persica HOM05D000225 ORTHO05D002520 1.4e-11 73.9 60 60.0
Actinidia37418 Actinidia chinensis HOM05D000225 ORTHO05D002520 2.4e-11 73.2 75 54.7
HanXRQChr06g0174451 Helianthus annuus HOM05D000225 ORTHO05D002520 2.4e-11 73.2 79 49.4
Potri.015G081601 Populus trichocarpa HOM05D000225 ORTHO05D002520 2.4e-11 73.2 77 48.1
Potri.T125208 Populus trichocarpa HOM05D000225 ORTHO05D002520 2.4e-11 73.2 77 48.1
Rhsim12G0112300 Rhododendron simsii HOM05D000225 ORTHO05D002520 2.4e-11 73.2 80 48.8
FAN12G1195 Fragaria x ananassa HOM05D000740 ORTHO05D002520 4.1e-11 72.4 75 49.3
FAN12G1520 Fragaria x ananassa HOM05D000740 ORTHO05D002520 4.1e-11 72.4 75 49.3
Manes.12G024400 Manihot esculenta HOM05D000225 ORTHO05D002520 4.1e-11 72.4 75 49.3
Peaxi162Scf00013g00053 Petunia axillaris HOM05D000225 ORTHO05D002520 4.1e-11 72.4 75 53.3
TPR.G38785 Trifolium pratense HOM05D000225 ORTHO05D002520 4.1e-11 72.4 75 48.0
Aqoxy3G01156 Aquilegia oxysepala HOM05D000225 ORTHO05D002520 5.3e-11 72.0 81 49.4
arahy.Tifrunner.gnm1.ann1.6V1TUE Arachis hypogaea HOM05D000225 ORTHO05D002520 5.3e-11 72.0 75 52.0
FAN07G0546 Fragaria x ananassa HOM05D000740 ORTHO05D002520 5.3e-11 72.0 75 49.3
FAN07G1090 Fragaria x ananassa HOM05D000740 ORTHO05D002520 5.3e-11 72.0 75 49.3
FvH4_4g25871 Fragaria vesca HOM05D000225 ORTHO05D002520 6.9e-11 71.6 75 49.3
Zm00001eb342090 Zea mays HOM05D000225 ORTHO05D002520 6.9e-11 71.6 79 48.1
FAN17G1047 Fragaria x ananassa HOM05D000740 ORTHO05D002520 9.0e-11 71.2 58 56.9
FAN22G2293 Fragaria x ananassa HOM05D000225 ORTHO05D002520 1.2e-10 70.9 58 56.9
arahy.Tifrunner.gnm1.ann1.7J5ZWH Arachis hypogaea HOM05D000225 ORTHO05D002520 1.5e-10 70.5 75 50.7
Migut.L01480 Erythranthe guttata HOM05D000225 ORTHO05D002520 1.5e-10 70.5 79 48.1
Atru.chr11.2119 Acer truncatum HOM05D000225 ORTHO05D002520 2.0e-10 70.1 79 49.4
Atru.chr11.2135 Acer truncatum HOM05D000225 ORTHO05D002520 2.0e-10 70.1 79 49.4
Nitab4.5_0003021g0010 Nicotiana tabacum HOM05D000225 ORTHO05D002520 2.0e-10 70.1 69 52.2
Ca_04581_v3 Cicer arietinum L. HOM05D000225 ORTHO05D002520 2.6e-10 69.7 75 49.3
Phvul.003G063700 Phaseolus vulgaris HOM05D000225 ORTHO05D002520 2.6e-10 69.7 163 33.7
VMungo0251G0993 Vigna mungo HOM05D000225 ORTHO05D002520 2.6e-10 69.7 98 44.9
CAN.G587.20 Capsicum annuum HOM05D000225 ORTHO05D002520 3.4e-10 69.3 73 50.7
Thecc.02G257100 Theobroma cacao HOM05D000225 ORTHO05D002520 3.4e-10 69.3 72 50.0
CAN.G298.29 Capsicum annuum HOM05D000225 ORTHO05D002520 4.5e-10 68.9 80 51.2
MBI10_g00732_MAGBIO Magnolia biondii HOM05D000225 ORTHO05D002520 4.5e-10 68.9 75 56.0
Medtr5g033490 Medicago truncatula HOM05D000225 ORTHO05D002520 4.5e-10 68.9 75 49.3
RcHm_v2.0_Chr4g0433311 Rosa chinensis HOM05D000225 ORTHO05D002520 4.5e-10 68.9 62 51.6
PGSC0003DMG400037297 Solanum tuberosum HOM05D000225 ORTHO05D002520 5.9e-10 68.6 76 50.0
ClCG05G025640 Citrullus lanatus HOM05D000225 ORTHO05D002520 7.7e-10 68.2 72 52.8
Sabra15G0105500 Salix brachista HOM05D000805 ORTHO05D000624 7.7e-10 68.2 71 50.7
Eucgr.B00237 Eucalyptus grandis HOM05D000225 ORTHO05D002520 1.3e-09 67.4 75 45.3
Psat2g094040 Pisum sativum HOM05D000225 ORTHO05D002520 1.7e-09 67.0 78 44.9
Cpa.g.sc33.2 Carica papaya HOM05D000225 ORTHO05D002520 2.2e-09 66.6 75 50.7
Glyma.01G027100 Glycine max HOM05D000225 ORTHO05D002520 2.2e-09 66.6 76 52.6
COL.COLO4_24245 Corchorus olitorius HOM05D006585 ORTHO05D002520 2.9e-09 66.2 71 46.5
Lj2g0016247 Lotus japonicus HOM05D000225 ORTHO05D002520 2.9e-09 66.2 75 48.0
Lj4g0021993 Lotus japonicus HOM05D000225 ORTHO05D002520 2.9e-09 66.2 79 48.1
Manes.13G026000 Manihot esculenta HOM05D000225 ORTHO05D002520 2.9e-09 66.2 82 47.6
Gohir.D02G159800 Gossypium hirsutum HOM05D000225 ORTHO05D002520 3.8e-09 65.9 79 45.6
Gorai.005G179900 Gossypium raimondii HOM05D000225 ORTHO05D002520 3.8e-09 65.9 79 45.6
HanXRQChr05g0154581 Helianthus annuus HOM05D000225 ORTHO05D002520 3.8e-09 65.9 75 42.7
PSO017G6892 Papaver somniferum HOM05D000225 ORTHO05D002520 3.8e-09 65.9 75 44.0
Prupe.5G168000 Prunus persica HOM05D000225 ORTHO05D002520 3.8e-09 65.9 75 50.7
Lj9A444G106 Lonicera japonica HOM05D000225 ORTHO05D002520 5.0e-09 65.5 73 50.7
VMungo1215G0379 Vigna mungo HOM05D000225 ORTHO05D002520 5.0e-09 65.5 79 48.1
MD06G1169200 Malus domestica HOM05D000225 ORTHO05D002520 8.5e-09 64.7 75 49.3
MD16G1098600 Malus domestica HOM05D000225 ORTHO05D002520 8.5e-09 64.7 53 56.6
Sabra08G0141900 Salix brachista HOM05D000225 ORTHO05D002520 8.5e-09 64.7 72 50.0
CsaV3_5G031250 Cucumis sativus L. HOM05D000225 ORTHO05D002520 1.1e-08 64.3 88 45.5
Gohir.A03G136600 Gossypium hirsutum HOM05D000225 ORTHO05D002520 1.4e-08 63.9 79 45.6
Aqoxy3G01157 Aquilegia oxysepala HOM05D000225 ORTHO05D002520 1.9e-08 63.5 75 48.0
Glyma.08G283300 Glycine max HOM05D000225 ORTHO05D002520 1.9e-08 63.5 75 48.0
Lalb_Chr16g0382021 Lupinus albus HOM05D000225 ORTHO05D002520 1.9e-08 63.5 75 48.0
MBI16_g23850_MAGBIO Magnolia biondii HOM05D000225 ORTHO05D002520 1.9e-08 63.5 72 51.4
COL.COLO4_30151 Corchorus olitorius HOM05D000225 ORTHO05D002520 5.5e-08 62.0 82 42.7
ECA246G1268 Erigeron canadensis HOM05D000225 ORTHO05D009144 5.5e-08 62.0 75 40.0
FAN08G1117 Fragaria x ananassa HOM05D000225 ORTHO05D002520 7.2e-08 61.6 83 45.8
Sed0021349 Sechium edule HOM05D000225 ORTHO05D002520 7.2e-08 61.6 72 50.0
FvH4_5g05950 Fragaria vesca HOM05D000225 ORTHO05D002520 9.4e-08 61.2 62 51.6
FAN18G4107 Fragaria x ananassa HOM05D000225 ORTHO05D002520 9.4e-08 61.2 62 51.6
Phvul.002G059500 Phaseolus vulgaris HOM05D000225 ORTHO05D002520 9.4e-08 61.2 79 44.3
MD13G1097500 Malus domestica HOM05D000225 ORTHO05D002520 1.6e-07 60.5 53 54.7
MELO3C011965.2 Cucumis melo HOM05D000225 ORTHO05D002520 2.7e-07 59.7 72 48.6
PGR119G1031 Punica granatum HOM05D000225 ORTHO05D002520 4.6e-07 58.9 73 43.8
arahy.Tifrunner.gnm1.ann1.P7CPN3 Arachis hypogaea HOM05D000225 ORTHO05D002520 7.9e-07 58.2 61 47.5
FAN04G2503 Fragaria x ananassa HOM05D000225 ORTHO05D002520 7.9e-07 58.2 62 48.4
FAN13G0456 Fragaria x ananassa HOM05D000225 ORTHO05D002520 7.9e-07 58.2 62 50.0
arahy.Tifrunner.gnm1.ann1.REE5L6 Arachis hypogaea HOM05D000225 ORTHO05D002520 1.4e-06 57.4 61 47.5


User provided reference genes

Program Settings