Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 0.0e+00 1220.7 643 100.0
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 0.0e+00 1166.4 625 98.4
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 1.0e-303 1046.2 622 90.0
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 4.8e-285 984.2 636 82.5
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 5.0e-266 921.0 628 79.8
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 6.6e-266 920.6 624 78.5
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 2.5e-265 918.7 639 77.2
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 1.4e-263 912.9 614 78.8
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 1.4e-263 912.9 624 78.2
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 3.1e-263 911.8 624 78.0
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 5.2e-263 911.0 627 80.2
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 2.6e-262 908.7 617 78.4
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 5.8e-262 907.5 615 79.0
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 2.9e-261 905.2 631 77.3
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.4e-260 902.9 622 77.5
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 2.4e-260 902.1 635 78.1
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.2e-260 901.7 622 77.8
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 5.4e-260 901.0 630 76.5
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 2.0e-259 899.0 623 77.2
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 4.6e-259 897.9 606 78.9
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 1.0e-258 896.7 629 76.0
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.3e-258 896.3 638 75.7
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 3.9e-258 894.8 635 76.5
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 6.6e-258 894.0 624 77.1
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.9e-257 892.5 624 76.9
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.5e-257 892.1 636 76.4
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 9.5e-257 890.2 630 77.9
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 1.1e-255 886.7 635 76.2
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.8e-255 885.9 636 76.3
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 3.4e-254 881.7 631 77.7
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 4.4e-254 881.3 584 78.8
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 4.4e-254 881.3 633 76.3
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.9e-253 877.9 635 75.0
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 3.2e-252 875.2 637 73.8
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 5.4e-252 874.4 601 77.0
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.0e-250 870.2 634 73.0
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 1.7e-250 869.4 617 74.7
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 5.1e-250 867.8 629 73.9
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 4.3e-249 864.8 629 73.3
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 3.6e-248 861.7 561 81.5
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.1e-247 860.1 640 72.5
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 2.3e-247 859.0 635 73.4
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 6.8e-247 857.4 622 74.1
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 8.9e-247 857.1 631 73.5
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 9.9e-246 853.6 632 72.9
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 3.7e-245 851.7 631 73.7
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 8.3e-245 850.5 551 80.8
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 1.2e-243 846.7 636 71.5
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 2.1e-243 845.9 622 71.5
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 2.1e-243 845.9 631 73.4
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 4.6e-243 844.7 627 71.8
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 1.9e-241 839.3 630 73.8
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.5e-241 839.0 545 80.2
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 3.3e-241 838.6 645 71.8
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 4.0e-239 831.6 616 71.3
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 5.2e-239 831.2 638 74.3
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 6.8e-239 830.9 638 74.1
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 9.9e-238 827.0 617 71.0
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 1.6e-235 819.7 559 79.6
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 1.0e-234 817.0 627 71.0
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 5.1e-234 814.7 636 70.1
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 1.4e-231 806.6 624 69.2
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 2.6e-230 802.4 623 72.1
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 5.8e-230 801.2 630 69.0
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 5.8e-230 801.2 630 69.0
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 1.4e-228 796.6 640 71.7
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 4.2e-228 795.0 630 70.0
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 5.4e-228 794.7 605 71.4
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 7.1e-228 794.3 628 69.3
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 2.1e-227 792.7 642 71.3
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 1.3e-226 790.0 625 69.8
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 6.6e-226 787.7 642 71.7
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.9e-225 786.2 641 70.8
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 3.3e-225 785.4 638 70.8
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 5.6e-225 784.6 641 70.5
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 9.6e-225 783.9 572 72.9
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.1e-223 780.4 502 80.9
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 1.1e-223 780.4 627 68.4
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 5.3e-223 778.1 637 71.4
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 6.9e-223 777.7 573 73.3
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 9.0e-223 777.3 637 71.3
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 1.2e-222 776.9 576 71.0
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.5e-222 776.5 636 71.5
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 1.5e-222 776.5 636 71.5
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 2.6e-222 775.8 636 71.4
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 4.5e-222 775.0 644 69.4
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 4.5e-222 775.0 636 70.1
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 4.5e-222 775.0 642 69.9
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 5.4e-220 768.1 584 72.6
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 6.0e-219 764.6 623 68.1
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 3.1e-215 752.3 624 66.7
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 3.4e-214 748.8 602 67.6
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 4.9e-213 745.0 632 66.1
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 3.5e-211 738.8 578 70.4
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.8e-210 736.5 627 66.0
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 9.6e-209 730.7 584 67.1
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.9e-205 719.2 546 72.0
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.0e-186 656.0 403 82.4
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 3.0e-186 656.0 403 82.6
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 5.0e-165 585.5 575 54.6
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 3.2e-164 582.8 607 52.7
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.4e-159 566.6 388 70.1
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.0e-154 549.3 581 52.3
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 2.7e-150 536.6 382 68.3
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 1.0e-149 534.6 557 54.0
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.8e-147 526.6 389 65.8
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 3.2e-143 513.1 382 66.5
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 9.2e-143 511.5 560 52.5
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.7e-128 464.2 276 84.8
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.6e-113 413.7 275 72.7
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 2.3e-101 374.0 201 91.0
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 1.2e-97 361.7 295 65.4
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.0e-97 360.9 274 65.7
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 1.2e-89 335.1 250 71.2
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.1e-79 302.0 529 37.1
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 1.9e-79 301.2 278 62.6
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 8.2e-75 285.8 362 43.9
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 4.0e-53 213.8 415 34.7
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.5e-48 196.4 116 82.8
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 2.4e-42 177.9 459 34.9
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 8.6e-40 169.5 275 44.0
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.1e-34 152.5 157 57.3
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 5.9e-33 146.7 127 63.8
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 4.0e-21 107.5 136 47.1
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 2.6e-20 104.8 111 52.3
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 2.1e-17 95.1 103 50.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 7.3e-15 86.7 81 58.0
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 2.6e-12 78.2 74 59.5
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 1.1e-10 72.8 66 60.6
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 1.1e-10 72.8 41 80.5
PRCOL_00003060 Prasinoderma coloniale HOM05D008474 ORTHO05D010618 4.6e-09 67.4 312 25.0
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 2.3e-08 65.1 366 24.6
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.0e-08 64.7 80 47.5
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 2.5e-07 61.6 253 24.9
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 3.3e-07 61.2 340 24.1
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 1.2e-06 59.3 277 26.4
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 1.6e-06 58.9 357 23.8
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 2.8e-06 58.2 85 40.0
PSO384G3680 Papaver somniferum HOM05D008447 ORTHO05D010638 6.2e-06 57.0 258 24.4


User provided reference genes

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