Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.0e-281 971.1 460 100.0
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 1.5e-264 915.6 454 96.0
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.5e-126 457.2 290 77.2
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 5.6e-110 402.1 466 45.3
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 5.8e-107 392.1 455 45.5
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 2.9e-106 389.8 434 45.4
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.4e-105 387.5 458 45.9
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 6.0e-104 382.1 459 45.8
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 8.7e-103 378.3 457 45.7
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 5.6e-102 375.6 464 43.1
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 5.6e-102 375.6 460 44.1
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.3e-101 374.4 456 44.5
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.3e-101 374.4 456 44.3
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.6e-101 374.0 430 46.3
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.8e-101 373.2 376 51.6
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 1.1e-100 371.3 458 45.4
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.1e-100 371.3 459 42.9
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.8e-100 370.5 471 42.7
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 1.2e-99 367.9 459 42.5
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 2.6e-99 366.7 452 44.0
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 7.6e-99 365.2 393 50.1
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 3.8e-98 362.8 456 43.2
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 3.8e-98 362.8 433 43.6
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 8.4e-98 361.7 442 44.1
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.6e-96 357.5 434 43.3
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.7e-96 356.7 458 42.8
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 6.0e-96 355.5 457 42.7
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 7.9e-96 355.1 457 42.5
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 5.1e-95 352.4 436 43.8
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 3.3e-94 349.7 454 40.7
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 7.4e-94 348.6 460 41.7
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 3.7e-93 346.3 462 43.7
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 4.8e-93 345.9 465 43.7
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 5.3e-92 342.4 433 43.6
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 5.3e-92 342.4 457 40.9
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 9.0e-92 341.7 435 40.7
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 1.5e-91 340.9 436 42.4
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 1.5e-91 340.9 457 40.5
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 2.0e-91 340.5 438 43.8
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 2.6e-91 340.1 461 42.5
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 2.6e-91 340.1 445 42.0
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 3.8e-90 336.3 436 43.1
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 4.9e-90 335.9 518 37.8
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 6.5e-90 335.5 462 40.7
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 6.5e-90 335.5 459 40.5
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.1e-89 334.7 443 41.5
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.5e-89 333.6 379 47.0
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 2.5e-89 333.6 414 43.5
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 2.5e-89 333.6 443 40.0
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 3.2e-89 333.2 463 39.7
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 5.5e-89 332.4 433 40.0
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 1.6e-88 330.9 450 39.6
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 6.0e-88 328.9 435 40.7
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 6.0e-88 328.9 435 40.7
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 1.0e-87 328.2 455 41.1
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.0e-87 328.2 455 41.1
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.3e-87 327.8 439 39.0
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 6.7e-87 325.5 439 38.7
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.1e-86 324.7 439 38.7
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 9.7e-86 321.6 471 39.9
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 6.3e-85 318.9 530 36.8
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 2.6e-83 313.5 457 40.0
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 3.4e-83 313.2 433 40.2
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 1.4e-81 307.8 394 42.9
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 1.6e-80 304.3 310 50.0
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 3.6e-80 303.1 479 38.4
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 1.8e-79 300.8 508 37.4
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.0e-79 300.1 438 37.4
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 6.7e-79 298.9 189 73.0
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 8.7e-79 298.5 466 39.9
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.1e-78 298.1 438 37.4
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.9e-78 297.4 467 37.5
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 9.7e-78 295.0 297 52.9
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.7e-77 293.1 464 37.1
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 4.8e-77 292.7 473 37.6
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 9.1e-76 288.5 436 36.9
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.7e-74 284.3 493 38.1
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.2e-74 283.9 415 40.2
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 2.9e-74 283.5 472 36.4
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 6.5e-74 282.3 390 40.8
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.2e-72 278.1 451 36.6
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 1.2e-72 278.1 469 35.2
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 1.6e-72 277.7 451 36.4
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.7e-72 276.9 457 35.7
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 3.6e-72 276.6 458 35.6
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 4.6e-72 276.2 462 33.8
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.7e-71 272.3 458 35.4
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 5.7e-70 269.2 466 36.3
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 5.7e-70 269.2 376 41.2
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.8e-69 266.9 488 36.3
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 3.7e-69 266.5 465 35.7
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 3.7e-69 266.5 469 35.6
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 3.7e-69 266.5 432 33.3
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.8e-68 264.2 483 36.0
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.4e-68 263.8 486 36.2
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 4.1e-68 263.1 479 35.5
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.1e-68 263.1 459 34.6
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 5.3e-68 262.7 373 39.1
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 6.9e-68 262.3 438 38.4
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.2e-67 261.5 483 36.0
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.5e-67 261.2 428 34.8
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 6.5e-66 255.8 430 34.2
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.5e-66 255.8 493 33.3
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.5e-66 255.8 493 32.7
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 1.1e-65 255.0 428 34.3
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 6.1e-64 249.2 449 35.9
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 8.8e-63 245.4 424 36.3
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 1.1e-62 245.0 454 34.8
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 9.7e-62 241.9 397 34.3
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 1.3e-61 241.5 464 35.3
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 1.7e-61 241.1 464 35.1
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.1e-60 238.4 270 44.8
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.1e-60 238.4 459 34.6
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 9.1e-60 235.3 464 34.3
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 9.1e-60 235.3 464 34.3
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 1.2e-59 235.0 464 34.1
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 2.9e-58 230.3 477 32.3
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 1.1e-57 228.4 438 31.5
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.9e-57 227.6 447 32.4
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.9e-57 227.6 429 32.6
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 2.5e-57 227.3 439 31.7
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 3.2e-57 226.9 438 33.1
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 5.5e-57 226.1 449 32.5
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 9.4e-57 225.3 437 32.5
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 9.4e-57 225.3 305 40.7
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 1.6e-56 224.6 464 34.1
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 1.6e-56 224.6 429 31.9
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 4.7e-56 223.0 458 31.7
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 2.3e-55 220.7 311 39.9
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 6.7e-55 219.2 148 74.3
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 1.2e-54 218.4 455 34.5
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 2.6e-54 217.2 435 31.3
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 9.7e-54 215.3 429 30.8
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 4.8e-53 213.0 454 29.5
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 4.8e-53 213.0 454 29.5
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.1e-52 210.3 306 36.9
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 3.8e-50 203.4 264 41.3
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 4.7e-48 196.4 475 30.5
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 8.0e-48 195.7 313 36.7
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 5.2e-47 193.0 436 30.3
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.4e-44 184.9 362 32.9
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 2.4e-44 184.1 250 40.4
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 4.1e-44 183.3 428 29.7
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 2.5e-41 174.1 296 36.1
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 8.0e-40 169.1 199 43.7
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 1.4e-39 168.3 311 34.1
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 5.2e-39 166.4 248 36.3
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 7.5e-30 136.0 406 24.4
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 4.1e-28 130.2 426 26.5
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 4.1e-20 103.6 116 47.4
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 9.2e-20 102.4 127 44.9
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 3.5e-19 100.5 116 46.6
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 5.6e-17 93.2 193 31.6
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.8e-15 88.2 130 33.1
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 2.6e-14 84.3 263 26.2
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 4.1e-12 77.0 111 42.3
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 7.8e-11 72.8 79 48.1
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.3e-10 72.0 86 43.0
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 3.9e-10 70.5 105 38.1
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.9e-09 68.2 88 35.2
MCO05G023 Micromonas commoda HOM05D004162 ORTHO05D004543 1.2e-08 65.5 349 22.3
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 2.4e-07 61.2 55 54.5


User provided reference genes

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