Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 6.1e-107 391.0 216 100.0
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 4.0e-90 335.1 190 95.8
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 3.3e-76 288.9 178 83.1
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 9.5e-76 287.3 187 81.3
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 2.1e-75 286.2 179 84.9
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 6.1e-75 284.6 179 87.7
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 1.0e-74 283.9 160 90.6
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 2.3e-74 282.7 179 87.2
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.5e-73 280.0 179 80.4
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 4.9e-72 275.0 179 79.3
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 4.9e-72 275.0 179 80.4
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 8.3e-72 274.2 179 81.0
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 8.3e-72 274.2 179 81.0
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 1.4e-71 273.5 179 80.4
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 5.4e-71 271.6 174 79.9
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 7.0e-71 271.2 179 86.0
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 2.0e-70 269.6 175 79.4
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 2.0e-70 269.6 177 79.1
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 2.0e-70 269.6 177 79.1
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 3.5e-70 268.9 177 76.3
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 5.9e-70 268.1 179 78.2
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 1.3e-69 266.9 171 79.5
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 2.3e-69 266.2 179 76.0
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 5.0e-69 265.0 185 76.8
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 8.6e-69 264.2 178 76.4
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 1.6e-67 260.0 176 76.7
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 2.8e-67 259.2 177 74.0
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 3.6e-67 258.8 177 76.8
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 1.4e-66 256.9 178 77.0
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 5.2e-66 255.0 164 86.0
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 8.9e-66 254.2 153 85.6
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 1.5e-65 253.4 176 75.0
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 3.4e-65 252.3 179 74.3
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 3.4e-65 252.3 167 81.4
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 7.5e-65 251.1 178 73.6
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 1.7e-64 250.0 174 75.3
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 2.9e-64 249.2 180 71.7
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 4.9e-64 248.4 147 84.4
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 2.4e-63 246.1 179 70.9
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 3.2e-63 245.7 179 70.4
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 4.1e-63 245.4 174 72.4
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 4.1e-63 245.4 179 73.2
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 5.4e-63 245.0 179 70.4
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 5.4e-63 245.0 179 73.2
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.2e-62 243.8 138 89.1
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 1.6e-62 243.4 146 83.6
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 2.0e-62 243.0 179 72.1
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 6.0e-62 241.5 179 72.6
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 6.0e-62 241.5 181 76.8
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 7.8e-62 241.1 179 70.4
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 7.8e-62 241.1 173 73.4
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.3e-61 240.4 178 80.3
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 1.3e-61 240.4 178 80.3
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 1.3e-61 240.4 177 72.3
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 1.3e-61 240.4 177 72.3
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 1.7e-61 240.0 179 71.5
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 8.6e-61 237.7 236 61.9
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 8.6e-61 237.7 174 70.7
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 8.6e-61 237.7 177 72.9
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 1.1e-60 237.3 139 84.9
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 1.5e-60 236.9 173 70.5
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 2.5e-60 236.1 208 63.9
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 4.3e-60 235.3 183 69.4
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 5.6e-60 235.0 177 69.5
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 7.3e-60 234.6 179 70.4
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 7.3e-60 234.6 179 70.4
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 9.5e-60 234.2 153 77.1
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 9.5e-60 234.2 172 75.6
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 9.5e-60 234.2 163 75.5
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 1.2e-59 233.8 178 66.9
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 1.6e-59 233.4 181 68.0
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 2.8e-59 232.6 182 69.8
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 3.6e-59 232.3 138 84.8
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 4.7e-59 231.9 179 69.8
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 1.1e-58 230.7 138 84.8
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 1.8e-58 229.9 162 75.9
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 1.5e-57 226.9 182 75.3
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 7.5e-57 224.6 173 66.5
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 8.3e-56 221.1 177 67.8
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 1.1e-55 220.7 138 81.2
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 4.1e-55 218.8 158 69.0
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 5.4e-55 218.4 179 65.9
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 1.6e-54 216.9 172 65.7
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 2.1e-54 216.5 172 64.5
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 4.6e-54 215.3 172 64.0
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 4.6e-54 215.3 133 79.7
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 6.0e-54 214.9 122 86.1
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 7.8e-54 214.5 172 64.0
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 1.3e-53 213.8 172 66.3
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 8.6e-53 211.1 173 64.2
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 1.5e-52 210.3 178 62.9
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 1.5e-52 210.3 137 78.1
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 9.5e-52 207.6 157 68.2
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 1.6e-51 206.8 165 65.5
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 1.1e-50 204.1 179 65.4
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 2.3e-50 203.0 159 67.9
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 5.2e-50 201.8 135 74.1
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 5.2e-50 201.8 136 73.5
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 6.8e-50 201.4 134 73.9
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 6.8e-50 201.4 134 73.9
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 6.8e-50 201.4 153 70.6
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 8.9e-50 201.1 143 72.7
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 1.2e-49 200.7 134 73.9
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 7.6e-49 198.0 133 77.4
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 8.4e-48 194.5 159 66.7
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 4.1e-47 192.2 107 88.8
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 2.7e-46 189.5 135 71.1
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 2.3e-45 186.4 128 76.6
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 7.3e-44 181.4 164 62.2
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 9.6e-44 181.0 143 66.4
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 1.3e-40 170.6 143 61.5
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 4.9e-40 168.7 125 67.2
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 8.4e-40 167.9 154 57.8
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.6e-38 163.7 179 55.3
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.6e-35 153.7 179 53.6
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 1.2e-33 147.5 188 46.3
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 2.6e-33 146.4 161 50.3
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 3.8e-32 142.5 113 61.9
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 4.2e-31 139.0 133 55.6
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 8.1e-27 124.8 120 58.3
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 1.8e-26 123.6 125 52.0
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 4.0e-26 122.5 104 59.6
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 6.9e-26 121.7 75 84.0
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 9.0e-26 121.3 80 76.2
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 9.0e-26 121.3 99 61.6
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 4.5e-25 119.0 123 56.9
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 5.6e-20 102.1 85 62.4
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-18 94.7 135 43.0
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 3.5e-14 82.8 83 59.0
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 1.6e-11 73.9 54 61.1
MD11G1071400 Malus domestica HOM05D005995 ORTHO05D007362 5.0e-08 62.4 43 79.1
Nn2g14856 Nelumbo nucifera HOM05D005995 ORTHO05D007362 1.1e-07 61.2 60 56.7
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 5.5e-07 58.9 35 77.1
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 9.3e-07 58.2 118 37.3
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 4.6e-06 55.8 118 35.6


User provided reference genes

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