Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 1.1e-55 220.3 169 100.0
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 5.6e-23 111.7 169 45.0
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.4e-18 97.1 169 66.9
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 1.2e-17 94.0 165 53.9
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 6.6e-16 88.2 164 61.6
Haze_23834 Corylus avellana HOM05D004188 ORTHO05D004445 2.1e-14 83.2 56 82.1
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 3.6e-14 82.4 70 60.0
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 1.8e-13 80.1 140 52.9
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 3.1e-13 79.3 61 67.2
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 6.8e-13 78.2 65 64.6
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 6.8e-13 78.2 55 72.7
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 8.9e-13 77.8 69 62.3
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.2e-12 77.4 73 57.5
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 1.2e-12 77.4 173 42.2
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 2.0e-12 76.6 168 57.1
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 2.0e-12 76.6 164 40.2
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 2.6e-12 76.3 73 60.3
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 3.4e-12 75.9 50 74.0
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.4e-12 75.9 65 63.1
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 4.4e-12 75.5 70 60.0
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 4.4e-12 75.5 70 55.7
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 4.4e-12 75.5 70 55.7
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 5.8e-12 75.1 73 56.2
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 7.5e-12 74.7 72 61.1
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 1.3e-11 73.9 72 56.9
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.3e-11 73.9 170 58.2
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.3e-11 73.9 181 45.9
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 1.3e-11 73.9 71 57.7
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 1.7e-11 73.6 156 42.9
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.2e-11 73.2 70 61.4
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.2e-11 73.2 70 61.4
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 2.9e-11 72.8 169 52.7
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 2.9e-11 72.8 55 69.1
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.7e-11 72.4 50 72.0
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 3.7e-11 72.4 61 62.3
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 4.9e-11 72.0 55 67.3
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 8.3e-11 71.2 169 43.8
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 8.3e-11 71.2 169 55.0
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 1.1e-10 70.9 170 37.6
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 1.4e-10 70.5 59 62.7
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 1.4e-10 70.5 184 46.7
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 1.9e-10 70.1 62 58.1
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 1.9e-10 70.1 70 52.9
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 2.4e-10 69.7 60 55.0
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 3.2e-10 69.3 169 56.2
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 3.2e-10 69.3 67 56.7
Lalb_Chr03g0027321 Lupinus albus HOM05D004188 ORTHO05D004445 3.2e-10 69.3 71 56.3
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 4.1e-10 68.9 61 62.3
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 5.4e-10 68.6 66 59.1
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 7.1e-10 68.2 71 56.3
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.2e-09 67.4 176 50.6
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 1.2e-09 67.4 67 56.7
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.2e-09 67.4 57 61.4
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.1e-09 66.6 166 41.0
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.1e-09 66.6 172 37.8
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 2.1e-09 66.6 59 54.2
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 2.7e-09 66.2 72 51.4
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 2.7e-09 66.2 166 41.0
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 2.7e-09 66.2 71 56.3
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 2.7e-09 66.2 66 57.6
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 2.7e-09 66.2 62 61.3
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 2.7e-09 66.2 58 58.6
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 3.5e-09 65.9 168 56.5
unitig_736.g22415 Utricularia gibba HOM05D004188 ORTHO05D004445 3.5e-09 65.9 53 62.3
Thhalv10017667m.g Eutrema salsugineum HOM05D011190 ORTHO05D013686 6.0e-09 65.1 67 52.2
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 6.0e-09 65.1 61 60.7
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 7.8e-09 64.7 74 59.5
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 7.8e-09 64.7 71 53.5
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 7.8e-09 64.7 71 53.5
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 1.0e-08 64.3 70 48.6
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 1.0e-08 64.3 48 64.6
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 1.0e-08 64.3 171 48.5
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 1.3e-08 63.9 67 61.2
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.3e-08 63.9 166 39.8
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 1.3e-08 63.9 54 57.4
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 1.3e-08 63.9 169 49.1
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 1.7e-08 63.5 55 60.0
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 1.7e-08 63.5 64 57.8
TAR633G2264 Trochodendron aralioides HOM05D004188 ORTHO05D004445 1.7e-08 63.5 171 44.4
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 1.7e-08 63.5 45 62.2
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 2.3e-08 63.2 55 58.2
BolC3t13742H Brassica oleracea HOM05D004188 ORTHO05D004445 2.3e-08 63.2 56 64.3
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 2.3e-08 63.2 160 45.6
TAR629G0463 Trochodendron aralioides HOM05D004188 ORTHO05D004445 3.0e-08 62.8 171 32.7
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 3.9e-08 62.4 188 36.2
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 3.9e-08 62.4 71 53.5
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 3.9e-08 62.4 174 35.6
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 3.9e-08 62.4 56 50.0
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 3.9e-08 62.4 63 49.2
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 3.9e-08 62.4 52 61.5
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 5.1e-08 62.0 56 62.5
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 5.1e-08 62.0 71 52.1
A10p17820 Brassica napus HOM05D004188 ORTHO05D004445 6.6e-08 61.6 53 66.0
PSO063G5002 Papaver somniferum HOM05D011190 ORTHO05D004445 6.6e-08 61.6 68 52.9
PSO339G4510 Papaver somniferum HOM05D011190 ORTHO05D004445 6.6e-08 61.6 68 52.9
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 6.6e-08 61.6 50 62.0
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 8.6e-08 61.2 50 62.0
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 8.6e-08 61.2 157 49.7
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 8.6e-08 61.2 44 68.2
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 1.1e-07 60.8 57 57.9
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 1.1e-07 60.8 162 37.7
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 1.1e-07 60.8 63 60.3
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 1.1e-07 60.8 73 47.9
Atru.chr3.3633 Acer truncatum HOM05D004188 ORTHO05D004445 1.5e-07 60.5 173 52.6
BcaB08g36360 Brassica carinata HOM05D004188 ORTHO05D004445 1.5e-07 60.5 56 60.7
C04p22940 Brassica napus HOM05D011190 ORTHO05D013686 1.5e-07 60.5 66 43.9
BolC4t23788H Brassica oleracea HOM05D011190 ORTHO05D013686 1.5e-07 60.5 66 43.9
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 1.5e-07 60.5 74 48.6
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.5e-07 60.5 169 47.3
PGR119G2389 Punica granatum HOM05D015476 ORTHO05D004445 1.9e-07 60.1 170 56.5
Aa31LG5G7780 Aethionema arabicum HOM05D011190 ORTHO05D013686 2.5e-07 59.7 63 52.4
AL4G21580 Arabidopsis lyrata HOM05D011190 ORTHO05D013686 2.5e-07 59.7 70 48.6
A03p11070 Brassica napus HOM05D004188 ORTHO05D004445 3.3e-07 59.3 56 60.7
C09p53350 Brassica napus HOM05D004188 ORTHO05D004445 3.3e-07 59.3 51 64.7
BraA03t10421Z Brassica rapa HOM05D004188 ORTHO05D004445 3.3e-07 59.3 56 60.7
BraA10t43861Z Brassica rapa HOM05D004188 ORTHO05D004445 3.3e-07 59.3 53 64.2
BcaB01g04664 Brassica carinata HOM05D004188 ORTHO05D004445 4.3e-07 58.9 55 60.0
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 4.3e-07 58.9 164 42.1
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 4.3e-07 58.9 164 42.1
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 4.3e-07 58.9 164 42.1
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 4.3e-07 58.9 69 55.1
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 4.3e-07 58.9 69 55.1
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 4.3e-07 58.9 48 58.3
Thecc.09G340200 Theobroma cacao HOM05D004188 ORTHO05D004445 4.3e-07 58.9 31 87.1
BcaNung07071 Brassica carinata HOM05D011190 ORTHO05D013686 5.6e-07 58.5 66 42.4
A04p21570 Brassica napus HOM05D011190 ORTHO05D013686 5.6e-07 58.5 58 55.2
Nitab4.5_0012712g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 5.6e-07 58.5 165 47.3
AT2G28440 Arabidopsis thaliana HOM05D011190 ORTHO05D013686 7.3e-07 58.2 58 50.0
arahy.Tifrunner.gnm1.ann1.H0Z3H2 Arachis hypogaea HOM05D004188 ORTHO05D004445 7.3e-07 58.2 51 56.9
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 7.3e-07 58.2 170 40.6
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 9.5e-07 57.8 167 36.5
BolC4t27286H Brassica oleracea HOM05D011190 ORTHO05D013686 9.5e-07 57.8 58 55.2
BraA04t17722Z Brassica rapa HOM05D011190 ORTHO05D013686 9.5e-07 57.8 58 55.2
PSO384G1281 Papaver somniferum HOM05D004188 ORTHO05D004445 9.5e-07 57.8 61 50.8
Sp4g11260 Schrenkiella parvula HOM05D011190 ORTHO05D013686 9.5e-07 57.8 68 47.1
unitig_699.g19195 Utricularia gibba HOM05D004188 ORTHO05D004445 9.5e-07 57.8 45 64.4
BcaC02g08169 Brassica carinata HOM05D011190 ORTHO05D013686 1.6e-06 57.0 58 53.4
C04p57660 Brassica napus HOM05D011190 ORTHO05D013686 1.6e-06 57.0 58 53.4
MELO3C012432.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.6e-06 57.0 57 54.4
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 1.6e-06 57.0 55 49.1
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 1.6e-06 57.0 186 50.0
Aqoxy1G01243 Aquilegia oxysepala HOM05D004188 ORTHO05D004445 2.1e-06 56.6 51 58.8
BraA07t29606Z Brassica rapa HOM05D011190 ORTHO05D013686 2.8e-06 56.2 66 43.9
Cpa.g.sc216.12 Carica papaya HOM05D004188 ORTHO05D004445 2.8e-06 56.2 35 74.3
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 2.8e-06 56.2 174 53.4
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.8e-06 56.2 57 47.4
HPP92_008764 Vanilla planifolia HOM05D004188 ORTHO05D004445 2.8e-06 56.2 57 47.4
BcaB06g28215 Brassica carinata HOM05D011190 ORTHO05D013686 4.7e-06 55.5 59 50.8
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 4.7e-06 55.5 70 45.7
PSO339G1636 Papaver somniferum HOM05D004188 ORTHO05D004445 6.2e-06 55.1 61 52.5
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 8.1e-06 54.7 167 46.1


User provided reference genes

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