Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.5e-118 429.5 216 100.0
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 5.5e-116 421.0 216 98.6
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 7.4e-113 410.6 216 94.9
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 3.2e-100 368.6 216 85.2
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 5.3e-95 351.3 216 79.2
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 5.3e-95 351.3 216 79.2
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 1.6e-94 349.7 214 81.8
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 5.0e-93 344.7 217 84.3
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 5.0e-93 344.7 215 81.4
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 4.2e-92 341.7 216 77.3
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 5.5e-92 341.3 221 76.9
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 9.4e-92 340.5 216 78.2
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.6e-91 339.7 216 76.9
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 2.1e-91 339.3 220 76.4
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 3.6e-91 338.6 216 76.9
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 4.7e-91 338.2 216 76.9
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 6.1e-91 337.8 216 78.2
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 2.3e-90 335.9 218 75.2
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 4.0e-90 335.1 216 75.5
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 4.0e-90 335.1 216 76.9
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 8.8e-90 334.0 214 75.2
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 8.8e-90 334.0 222 75.7
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 1.2e-89 333.6 216 75.5
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.5e-89 333.2 216 76.4
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 2.0e-89 332.8 216 75.0
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 4.4e-89 331.6 216 75.5
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 5.7e-89 331.3 216 75.5
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 2.2e-88 329.3 218 77.5
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 2.2e-88 329.3 217 73.7
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 2.8e-88 328.9 216 75.0
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 4.8e-88 328.2 214 74.8
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 6.3e-88 327.8 216 74.1
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 1.1e-87 327.0 216 74.1
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 1.1e-87 327.0 216 75.5
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 1.8e-87 326.2 214 72.0
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 1.8e-87 326.2 215 76.3
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.1e-87 325.5 214 72.9
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.1e-87 325.5 214 72.9
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 4.1e-87 325.1 215 75.8
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 4.1e-87 325.1 215 75.3
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 9.1e-87 323.9 216 74.5
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 1.6e-86 323.2 218 73.4
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 2.7e-86 322.4 213 75.1
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 4.5e-86 321.6 216 74.1
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 5.9e-86 321.2 213 72.3
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 7.7e-86 320.9 216 75.5
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 7.7e-86 320.9 217 74.2
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 7.7e-86 320.9 214 72.0
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.7e-85 319.7 216 72.7
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 3.8e-85 318.5 220 74.5
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 1.5e-84 316.6 218 71.6
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.5e-84 316.6 214 72.4
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 2.5e-84 315.8 221 71.9
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 5.5e-84 314.7 215 71.6
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 5.5e-84 314.7 215 73.0
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 2.7e-83 312.4 214 73.8
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 3.6e-83 312.0 222 68.5
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 3.6e-83 312.0 218 72.9
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 6.1e-83 311.2 216 72.2
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 8.0e-83 310.8 220 70.5
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 1.0e-82 310.5 228 71.5
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.4e-82 310.1 216 71.8
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 1.8e-82 309.7 226 71.7
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 2.3e-82 309.3 213 71.8
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 6.8e-82 307.8 217 70.5
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 6.8e-82 307.8 218 72.5
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 8.8e-82 307.4 214 70.6
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 1.2e-81 307.0 228 71.1
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 2.0e-81 306.2 214 70.1
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 2.6e-81 305.8 223 66.8
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 3.4e-81 305.4 220 68.2
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 3.4e-81 305.4 220 68.2
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 3.4e-81 305.4 216 73.6
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 3.4e-81 305.4 199 76.4
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 5.7e-81 304.7 206 72.8
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 7.5e-81 304.3 224 67.4
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 7.5e-81 304.3 224 67.4
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 3.7e-80 302.0 223 66.4
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 4.9e-80 301.6 214 72.9
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 6.3e-80 301.2 224 67.0
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 8.3e-80 300.8 224 67.0
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 8.3e-80 300.8 224 67.0
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 2.4e-79 299.3 199 73.9
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 2.4e-79 299.3 208 71.6
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 4.1e-79 298.5 211 71.6
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 7.0e-79 297.7 221 66.5
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 7.0e-79 297.7 220 67.3
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 1.2e-78 297.0 224 66.1
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 1.2e-78 297.0 224 65.6
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 2.7e-78 295.8 222 65.8
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 2.7e-78 295.8 207 70.5
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 5.9e-78 294.7 172 82.0
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 1.3e-77 293.5 217 69.1
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 1.3e-77 293.5 217 68.2
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 1.7e-77 293.1 184 77.7
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 2.3e-77 292.7 216 67.6
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 8.6e-77 290.8 221 65.2
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 8.6e-77 290.8 202 73.8
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 1.9e-76 289.7 216 67.6
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 4.3e-76 288.5 216 67.1
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 7.3e-76 287.7 202 73.3
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 9.5e-76 287.3 218 67.9
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 9.5e-76 287.3 204 71.6
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 9.5e-76 287.3 206 68.9
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 6.1e-75 284.6 209 65.6
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 6.8e-74 281.2 186 72.6
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 6.8e-74 281.2 223 66.8
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 8.9e-74 280.8 185 71.9
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 1.3e-72 276.9 223 67.3
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 2.2e-72 276.2 219 61.6
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 8.3e-72 274.2 249 58.6
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 2.0e-70 269.6 183 70.5
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 7.8e-70 267.7 187 68.4
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 8.6e-69 264.2 256 58.2
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 8.6e-69 264.2 256 58.2
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 1.6e-67 260.0 217 59.9
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 2.8e-67 259.2 220 63.6
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 2.3e-66 256.1 215 59.5
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 6.8e-66 254.6 171 71.3
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 8.9e-66 254.2 182 70.3
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 5.8e-65 251.5 174 70.1
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 3.7e-64 248.8 146 79.5
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 3.5e-62 242.3 145 79.3
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 3.2e-55 219.2 197 59.4
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 1.7e-53 213.4 150 72.0
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 6.6e-53 211.5 145 72.4
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 2.8e-51 206.1 166 62.7
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 2.6e-49 199.5 139 71.9
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 3.2e-47 192.6 197 48.2
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.6e-46 190.3 215 45.1
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 6.0e-46 188.3 142 62.0
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 1.2e-43 180.6 124 71.8
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 2.8e-43 179.5 164 51.8
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 3.1e-42 176.0 125 68.8
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 4.4e-41 172.2 145 62.8
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 9.9e-41 171.0 143 58.0
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.7e-37 160.2 107 70.1
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 2.3e-37 159.8 213 40.8
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 3.0e-37 159.5 178 44.4
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 1.1e-34 151.0 205 40.5
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 6.9e-34 148.3 148 46.6
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 2.4e-31 139.8 155 42.6
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 7.1e-31 138.3 218 40.8
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 3.3e-28 129.4 181 39.8
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 1.5e-25 120.6 75 72.0
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 2.4e-23 113.2 77 66.2
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 1.2e-22 110.9 153 39.9
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 6.0e-22 108.6 91 63.7
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 2.1e-19 100.1 77 64.9
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 4.0e-18 95.9 75 62.7
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 4.0e-18 95.9 78 65.4
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 7.6e-17 91.7 49 81.6
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 4.2e-15 85.9 69 59.4
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 7.1e-15 85.1 49 79.6
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 9.3e-15 84.7 87 56.3
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 7.9e-14 81.6 48 72.9
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 3.0e-13 79.7 58 60.3
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 2.6e-09 66.6 55 61.8
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 4.5e-09 65.9 44 65.9
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 5.0e-08 62.4 44 68.2
THA.LOC104815287 Tarenaya hassleriana HOM05D005326 ORTHO05D006734 1.9e-07 60.5 142 28.9
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 2.5e-07 60.1 33 81.8
Psat1g082200 Pisum sativum HOM05D004585 ORTHO05D005640 3.2e-07 59.7 48 56.2
Lsat_1_v5_gn_8_8220 Lactuca sativa HOM05D001543 ORTHO05D001722 7.2e-07 58.5 67 43.3
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 1.6e-06 57.4 33 78.8
CAN.G530.9 Capsicum annuum HOM05D000115 ORTHO05D000645 6.1e-06 55.5 38 65.8
CSS0040420 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 7.9e-06 55.1 91 30.8


User provided reference genes

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