Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 5.1e-243 844.0 417 100.0
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 3.9e-227 791.2 419 95.0
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 6.5e-166 587.8 480 66.5
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.9e-165 586.3 458 69.2
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 5.2e-155 551.6 384 75.5
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 4.0e-147 525.4 424 66.5
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 8.9e-147 524.2 411 65.5
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.4e-146 521.9 405 66.9
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 5.8e-146 521.5 401 67.3
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 8.3e-145 517.7 410 65.9
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.4e-144 516.2 405 66.7
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 7.0e-144 514.6 403 66.7
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 7.0e-144 514.6 405 66.7
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 4.6e-143 511.9 405 66.2
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.9e-142 508.8 405 66.2
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 8.6e-142 507.7 418 67.7
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 7.3e-141 504.6 403 66.3
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.1e-139 500.7 404 66.3
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.2e-138 497.3 418 62.0
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 5.8e-138 495.0 437 61.1
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 6.4e-137 491.5 406 63.3
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 6.4e-137 491.5 404 65.8
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.4e-136 490.3 423 62.6
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.9e-136 490.0 418 66.3
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 7.1e-136 488.0 411 63.7
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 4.6e-135 485.3 424 63.2
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 1.0e-134 484.2 406 62.6
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 2.3e-134 483.0 416 62.0
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 8.1e-132 474.6 403 62.5
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 1.4e-131 473.8 416 57.7
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 6.8e-131 471.5 418 60.0
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 6.8e-131 471.5 402 62.7
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.0e-130 469.9 418 62.7
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.4e-130 469.2 418 62.4
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 1.3e-129 467.2 418 62.4
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.9e-129 465.3 426 61.0
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 1.9e-128 463.4 422 60.0
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 4.1e-128 462.2 454 57.9
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 9.2e-128 461.1 422 60.0
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 9.2e-128 461.1 402 61.4
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 1.2e-127 460.7 409 58.2
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 1.6e-127 460.3 435 58.9
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 3.5e-127 459.1 424 60.1
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 5.6e-125 451.8 419 58.7
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.8e-123 446.8 421 57.0
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 1.8e-123 446.8 417 55.6
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 4.0e-123 445.7 416 58.4
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 4.4e-122 442.2 417 56.6
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 5.8e-122 441.8 421 57.2
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 3.8e-121 439.1 408 57.6
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 4.9e-121 438.7 510 51.6
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 7.1e-120 434.9 418 61.0
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 1.6e-119 433.7 416 57.2
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 3.5e-119 432.6 413 56.2
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 7.8e-119 431.4 391 59.1
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 6.6e-118 428.3 420 55.0
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 8.1e-116 421.4 410 54.4
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 1.1e-115 421.0 423 54.6
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 4.0e-115 419.1 407 57.7
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 4.0e-115 419.1 413 56.2
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.8e-113 412.5 293 68.6
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 4.9e-113 412.1 404 54.0
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 4.2e-112 409.1 415 53.3
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.2e-111 407.5 291 67.7
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 1.6e-111 407.1 312 65.7
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 4.6e-111 405.6 430 53.7
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.3e-110 404.1 439 53.5
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 6.2e-108 395.2 386 54.9
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 8.1e-108 394.8 404 53.2
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 5.3e-107 392.1 431 51.7
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 9.0e-107 391.3 398 55.0
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 4.5e-106 389.0 416 51.4
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 5.8e-106 388.7 403 51.4
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 7.6e-106 388.3 413 54.0
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 9.9e-106 387.9 408 52.5
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.3e-105 387.5 401 54.1
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 3.8e-105 386.0 421 53.7
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 8.4e-105 384.8 408 52.5
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 8.4e-105 384.8 408 52.5
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 2.4e-104 383.3 296 61.8
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 9.3e-104 381.3 434 52.5
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 1.2e-103 380.9 404 51.5
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 1.2e-103 380.9 418 49.5
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 1.2e-103 380.9 418 49.5
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 3.5e-103 379.4 397 53.4
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.0e-102 377.9 407 52.1
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 3.0e-102 376.3 413 53.3
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 3.0e-102 376.3 293 62.5
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 8.7e-102 374.8 281 66.2
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 8.7e-102 374.8 405 49.4
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 4.3e-101 372.5 406 52.2
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 1.3e-100 370.9 408 49.3
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 4.8e-100 369.0 409 50.4
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 4.8e-100 369.0 454 47.8
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.5e-98 364.0 413 50.8
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 1.2e-95 354.4 421 49.4
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 2.7e-95 353.2 529 42.0
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 7.9e-95 351.7 410 50.2
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.8e-92 343.2 432 45.4
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 2.8e-92 343.2 422 47.6
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 6.3e-92 342.0 424 48.8
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 1.8e-91 340.5 423 48.9
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.1e-91 339.3 288 63.2
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 6.9e-91 338.6 431 44.1
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 1.6e-84 317.4 436 44.5
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 1.5e-82 310.8 405 44.2
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 7.7e-82 308.5 298 56.7
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 5.5e-80 302.4 278 55.0
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 6.1e-79 298.9 279 55.2
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 6.1e-79 298.9 278 54.7
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 6.1e-79 298.9 278 54.7
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 6.1e-79 298.9 279 55.2
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 1.1e-77 294.7 305 50.5
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 7.7e-74 282.0 221 62.0
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 7.4e-69 265.4 340 48.8
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 7.4e-69 265.4 330 49.1
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 1.7e-68 264.2 251 52.6
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 2.7e-63 246.9 321 44.5
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.5e-61 241.1 280 48.2
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 7.5e-61 238.8 302 46.0
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 8.2e-60 235.3 167 69.5
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 5.5e-56 222.6 188 59.6
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 4.1e-51 206.5 156 62.8
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 2.7e-50 203.8 282 40.8
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 1.9e-48 197.6 257 46.3
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 1.2e-47 194.9 284 40.8
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.3e-46 190.7 138 68.8
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 6.8e-46 189.1 214 54.2
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 1.2e-45 188.3 281 39.5
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 7.5e-45 185.7 139 64.7
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 4.9e-44 183.0 255 40.4
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 1.1e-43 181.8 284 39.4
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 4.5e-42 176.4 133 63.9
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 1.1e-40 171.8 243 38.7
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 8.9e-38 162.2 111 69.4
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.4e-35 154.1 108 70.4
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 5.0e-33 146.4 99 70.7
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 2.3e-30 137.5 146 54.1
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 5.2e-30 136.3 222 41.0
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.3e-28 131.7 185 42.2
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.2e-28 131.0 212 39.6
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 3.0e-25 120.6 72 75.0
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 6.6e-25 119.4 131 53.4
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 5.6e-24 116.3 101 52.5
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.8e-22 109.4 63 73.0
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 1.2e-21 108.6 67 73.1
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 3.4e-21 107.1 169 39.6
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.4e-21 107.1 68 69.1
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 9.9e-21 105.5 286 27.6
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 1.3e-20 105.1 71 71.8
Atru.chr1.1384 Acer truncatum HOM05D004413 ORTHO05D005199 6.0e-18 96.3 97 58.8
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.7e-17 94.7 55 74.5
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.6e-16 89.7 165 37.0
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.0e-13 81.3 96 50.0
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.0e-13 81.3 48 70.8
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.9e-13 79.0 53 69.8
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.2e-12 77.8 53 67.9
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 9.2e-11 72.4 95 37.9
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.3e-09 67.8 46 60.9
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.9e-08 64.7 44 68.2
Sc24g0000530 Simmondsia chinensis HOM05D004413 ORTHO05D005199 2.8e-07 60.8 139 36.0
Lju170C28T1 Lonicera japonica HOM05D004413 ORTHO05D005199 1.4e-06 58.5 81 48.1


User provided reference genes

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