Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 3.2e-63 245.4 167 100.0
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 5.1e-53 211.5 124 90.3
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 2.8e-51 205.7 127 87.4
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.4e-50 203.4 124 87.9
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 2.4e-50 202.6 246 65.4
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 3.1e-50 202.2 128 84.4
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 4.0e-50 201.8 123 85.4
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 4.0e-50 201.8 127 85.8
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 4.0e-50 201.8 127 85.8
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 4.0e-50 201.8 127 83.5
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 6.9e-50 201.1 127 84.3
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 9.0e-50 200.7 129 83.7
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.2e-49 200.3 129 83.7
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.2e-49 200.3 129 83.7
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.2e-49 200.3 129 83.7
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 1.2e-49 200.3 123 84.6
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.5e-49 199.9 124 84.7
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 2.0e-49 199.5 126 84.9
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 2.0e-49 199.5 124 84.7
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 3.4e-49 198.7 122 85.2
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 3.4e-49 198.7 123 83.7
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 7.6e-49 197.6 122 86.1
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 7.6e-49 197.6 127 84.3
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 7.6e-49 197.6 127 84.3
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 1.0e-48 197.2 124 83.1
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.7e-48 196.4 124 85.5
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.7e-48 196.4 122 86.1
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.2e-48 196.1 122 85.2
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 3.8e-48 195.3 122 84.4
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 3.8e-48 195.3 127 82.7
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 4.9e-48 194.9 124 83.1
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 8.4e-48 194.1 124 80.6
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 8.4e-48 194.1 126 83.3
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 1.4e-47 193.4 160 81.2
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 1.9e-47 193.0 123 83.7
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 2.5e-47 192.6 124 82.3
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 2.5e-47 192.6 127 81.1
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 2.5e-47 192.6 122 82.0
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 3.2e-47 192.2 127 81.9
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 4.2e-47 191.8 127 81.1
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 4.2e-47 191.8 127 81.9
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 4.2e-47 191.8 122 81.1
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 4.2e-47 191.8 124 81.5
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 5.5e-47 191.4 123 82.9
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 5.5e-47 191.4 123 82.1
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 7.1e-47 191.0 126 78.6
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 9.3e-47 190.7 126 80.2
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 1.2e-46 190.3 141 75.9
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.6e-46 189.9 123 81.3
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 2.7e-46 189.1 126 80.2
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.5e-46 188.7 126 79.4
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 3.5e-46 188.7 127 80.3
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 3.5e-46 188.7 126 79.4
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 4.6e-46 188.3 167 73.1
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 7.9e-46 187.6 121 80.2
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 7.9e-46 187.6 127 78.7
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 7.9e-46 187.6 124 79.8
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.0e-45 187.2 127 80.3
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.0e-45 187.2 123 78.9
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 2.3e-45 186.0 122 79.5
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 2.3e-45 186.0 124 79.0
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.0e-45 185.7 120 81.7
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 3.9e-45 185.3 118 82.2
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 5.1e-45 184.9 123 80.5
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 5.1e-45 184.9 127 77.2
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 5.1e-45 184.9 124 79.0
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 6.7e-45 184.5 123 76.4
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 6.7e-45 184.5 123 76.4
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 6.7e-45 184.5 123 76.4
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 6.7e-45 184.5 123 78.0
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 6.7e-45 184.5 123 78.0
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 8.7e-45 184.1 123 77.2
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 8.7e-45 184.1 123 78.0
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 1.1e-44 183.7 123 76.4
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.5e-44 183.3 123 75.6
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.9e-44 183.0 123 75.6
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 1.9e-44 183.0 121 76.9
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 1.9e-44 183.0 122 78.7
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.9e-44 183.0 124 78.2
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 3.3e-44 182.2 123 76.4
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 3.3e-44 182.2 124 79.8
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 4.3e-44 181.8 127 76.4
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 4.3e-44 181.8 124 77.4
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 4.3e-44 181.8 123 80.5
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 5.7e-44 181.4 123 75.6
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 5.7e-44 181.4 127 75.6
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 5.7e-44 181.4 122 78.7
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 9.7e-44 180.6 103 94.2
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.2e-43 179.5 123 75.6
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 2.2e-43 179.5 118 79.7
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.2e-43 179.5 118 79.7
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.2e-43 179.5 118 79.7
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 2.2e-43 179.5 124 76.6
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 2.8e-43 179.1 122 77.9
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 4.8e-43 178.3 124 75.8
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 4.8e-43 178.3 118 78.8
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 6.3e-43 177.9 121 74.4
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 1.1e-42 177.2 123 79.7
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.4e-42 176.8 118 78.0
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 1.4e-42 176.8 127 74.8
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 4.1e-42 175.3 237 59.9
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 9.0e-42 174.1 128 71.1
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 1.2e-41 173.7 126 73.8
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 2.0e-41 172.9 123 74.8
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 2.6e-41 172.6 130 70.8
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 1.7e-40 169.9 121 73.6
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 2.9e-40 169.1 116 76.7
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 8.5e-40 167.5 123 71.5
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 1.9e-39 166.4 119 71.4
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 2.5e-39 166.0 123 74.8
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 3.2e-39 165.6 124 66.9
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 4.6e-38 161.8 156 59.0
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.0e-37 160.6 103 82.5
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 1.4e-37 160.2 127 70.1
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 1.8e-37 159.8 127 65.4
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.8e-37 159.8 127 74.0
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.9e-36 156.4 122 65.6
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 1.3e-35 153.7 100 81.0
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 8.2e-35 151.0 102 79.4
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 8.2e-35 151.0 118 66.9
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.3e-34 148.3 95 82.1
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 4.5e-33 145.2 91 83.5
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 7.7e-33 144.4 122 63.9
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.4e-31 140.2 120 59.2
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.1e-30 136.3 124 55.6
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.7e-30 136.0 124 55.6
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 5.1e-29 131.7 99 72.7
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 4.4e-28 128.6 121 54.5
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 7.4e-28 127.9 122 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 2.2e-27 126.3 123 52.8
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.1e-20 104.0 101 61.4
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 1.1e-20 104.0 79 70.9
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 7.4e-20 101.3 65 76.9
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 1.3e-19 100.5 91 58.2
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 1.3e-19 100.5 91 58.2
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.2e-17 94.0 96 60.4
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 1.5e-12 77.0 71 66.2
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 2.0e-12 76.6 71 66.2
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 2.0e-12 76.6 71 66.2
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 2.4e-10 69.7 47 72.3
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 3.5e-09 65.9 50 62.0


User provided reference genes

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