Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1933.3 988 100.0
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1852.8 1083 89.3
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1801.9 989 90.5
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1779.6 988 88.1
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1778.1 984 90.0
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1771.5 988 88.7
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1758.0 988 87.0
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1753.8 988 87.1
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1749.9 988 86.7
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1742.6 988 87.6
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1740.7 989 87.7
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1740.3 986 86.7
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1738.4 988 87.0
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1738.0 1026 88.9
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1736.1 988 87.3
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1733.4 988 86.4
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1732.6 988 86.6
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1731.1 988 85.6
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1730.7 989 86.0
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1729.5 988 85.8
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1727.2 988 86.0
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1723.8 988 85.5
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1722.2 1012 85.0
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1721.4 1012 84.9
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1716.4 989 85.2
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1714.1 989 85.5
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1709.1 998 84.8
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1707.6 989 85.2
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1706.8 1012 84.2
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1705.6 989 85.1
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1699.1 989 84.5
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1691.0 988 83.8
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1690.6 989 83.8
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1686.4 989 83.7
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1685.6 986 83.6
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1684.1 988 84.0
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1679.5 1015 82.4
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1675.6 997 83.4
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1672.5 990 83.2
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1666.0 990 83.5
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1665.2 989 83.1
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1664.8 1029 81.2
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1662.1 988 81.8
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1660.2 987 82.8
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1657.9 988 81.8
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1654.8 993 82.3
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1651.0 989 81.3
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1651.0 1005 81.5
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1649.0 989 81.3
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1648.3 990 81.5
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1647.9 991 81.3
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1645.6 1077 77.4
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1645.6 996 81.5
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1643.6 990 81.1
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1640.6 990 80.9
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1640.2 988 81.3
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1639.4 989 81.1
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1639.0 985 81.0
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1638.2 988 82.9
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1637.1 1001 80.2
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1635.2 991 80.8
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1631.3 989 80.7
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1629.4 989 82.4
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1623.6 994 80.3
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1622.1 989 80.1
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1617.8 986 80.6
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1617.1 1004 78.9
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1614.7 991 80.7
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1614.4 989 81.4
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1611.7 997 80.3
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1611.7 1004 79.0
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1609.0 933 84.9
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1605.9 984 80.2
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1605.1 1006 78.4
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1602.4 991 80.1
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1599.7 1017 79.0
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1595.9 989 79.4
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1593.6 989 79.9
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1588.5 986 79.4
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1575.8 989 78.8
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1571.2 937 82.9
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1570.4 989 78.1
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1563.5 1039 75.1
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1554.3 928 83.8
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1552.0 986 77.6
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1536.5 982 77.3
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1508.8 980 75.4
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1489.9 989 75.9
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1486.5 989 75.2
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1485.7 785 97.1
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1441.0 896 78.7
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1439.9 847 83.4
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1429.5 986 71.3
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1401.7 817 85.3
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1379.8 994 69.8
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1358.6 792 85.2
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1342.4 771 86.0
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1324.7 995 70.7
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1317.4 854 77.3
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1317.0 792 82.4
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1310.4 793 82.2
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1303.1 952 69.1
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1300.8 762 84.1
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1258.4 760 82.1
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1189.1 782 77.2
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1166.0 989 60.2
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1158.3 761 77.4
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1151.3 990 58.3
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 8.2e-308 1060.4 643 84.0
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 8.8e-294 1013.8 611 81.7
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 8.8e-294 1013.8 987 52.4
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 4.8e-284 981.5 790 61.4
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 1.5e-282 976.5 558 86.6
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 1.5e-282 976.5 664 73.5
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.3e-257 892.9 574 77.5
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 1.4e-254 883.6 519 84.0
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 7.8e-250 867.8 611 69.6
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 3.9e-241 839.0 517 81.2
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 5.4e-211 738.8 418 84.2
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 6.9e-174 615.5 336 89.0
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.7e-151 541.2 336 78.3
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.3e-137 494.2 282 84.8
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 1.1e-118 432.2 1086 29.8
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-111 408.7 249 81.1
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 9.2e-110 402.5 230 80.9
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.9e-102 378.3 231 76.2
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 5.1e-100 370.2 204 86.3
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 2.5e-99 367.9 268 71.3
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.1e-98 364.8 1036 26.6
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 9.0e-97 359.4 1266 26.3
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 9.3e-94 349.4 207 80.2
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 9.0e-89 332.8 231 69.3
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 3.2e-86 324.3 198 80.3
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 4.8e-82 310.5 178 81.5
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.2e-79 301.6 211 71.6
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.2e-69 269.2 153 82.4
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 1.2e-69 269.2 284 50.4
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 1.8e-68 265.4 441 38.3
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 1.1e-62 246.1 152 77.0
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 1.5e-59 235.7 127 84.3
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 1.1e-54 219.5 135 75.6
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 2.8e-50 204.9 120 80.8
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 3.7e-42 177.9 163 59.5
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.9e-40 170.6 129 67.4
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.7e-40 170.2 106 78.3
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.5e-38 164.1 174 56.3
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 2.8e-34 151.8 88 80.7
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.7e-34 151.4 94 76.6
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 3.5e-32 144.8 99 68.7
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 4.4e-27 127.9 75 82.7
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.8e-27 126.7 68 91.2
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 7.0e-25 120.6 75 77.3
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.0e-24 119.0 91 67.0
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.7e-24 118.6 108 59.3
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.3e-23 116.3 81 64.2
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 5.6e-22 110.9 127 53.5
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 1.2e-21 109.8 123 53.7
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 5.8e-19 100.9 52 88.5
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 2.2e-18 99.0 87 52.9
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 8.3e-18 97.1 117 41.9
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.0e-16 92.4 54 79.6
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 3.5e-16 91.7 100 52.0
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.0e-15 87.8 80 63.8
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.4e-12 79.7 48 64.6
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 1.8e-12 79.3 231 24.7
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 8.9e-12 77.0 160 35.0
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 1.7e-07 62.8 47 70.2
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 2.3e-07 62.4 50 60.0
Actinidia13759 Actinidia chinensis HOM05D002694 ORTHO05D002927 4.3e-06 58.2 35 77.1


User provided reference genes

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