Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 3.3e-83 311.6 154 100.0
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 1.9e-78 295.8 147 98.0
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 1.9e-78 295.8 147 98.0
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 9.4e-78 293.5 146 97.9
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 8.3e-74 280.4 154 89.6
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 1.4e-73 279.6 149 91.3
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 1.4e-73 279.6 149 91.3
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 1.8e-73 279.3 154 87.7
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.8e-73 279.3 151 90.7
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.8e-73 279.3 151 90.7
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.8e-73 279.3 151 90.7
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.8e-73 279.3 151 90.7
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 4.1e-73 278.1 151 90.1
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 4.1e-73 278.1 151 90.1
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 4.1e-73 278.1 151 90.1
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 4.1e-73 278.1 151 88.1
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 5.4e-73 277.7 154 89.6
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 5.4e-73 277.7 154 87.7
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 5.4e-73 277.7 151 90.1
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 9.1e-73 276.9 151 90.1
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.2e-72 276.6 154 85.7
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 1.2e-72 276.6 154 89.6
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 1.2e-72 276.6 148 90.5
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.2e-72 276.6 154 87.0
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.2e-72 276.6 151 89.4
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.6e-72 276.2 154 87.0
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 1.6e-72 276.2 150 88.0
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 1.6e-72 276.2 150 88.0
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.6e-72 276.2 145 91.7
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.0e-72 275.8 151 88.7
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.0e-72 275.8 151 88.7
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 2.0e-72 275.8 154 89.0
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.0e-72 275.8 151 88.7
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 2.0e-72 275.8 154 89.0
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 2.0e-72 275.8 151 88.7
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 2.0e-72 275.8 154 89.0
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.0e-72 275.8 153 87.6
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.0e-72 275.8 153 87.6
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 2.7e-72 275.4 151 88.1
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 3.5e-72 275.0 151 88.7
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.5e-72 275.0 150 88.0
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.5e-72 275.0 151 87.4
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 4.5e-72 274.6 151 88.7
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 4.5e-72 274.6 154 87.0
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 4.5e-72 274.6 145 91.0
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 5.9e-72 274.2 154 87.7
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 5.9e-72 274.2 151 89.4
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 5.9e-72 274.2 151 88.7
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 5.9e-72 274.2 151 89.4
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 5.9e-72 274.2 151 87.4
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 7.7e-72 273.9 151 88.1
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 7.7e-72 273.9 148 89.9
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 7.7e-72 273.9 151 88.7
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.0e-71 273.5 151 88.7
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 1.0e-71 273.5 150 88.0
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.0e-71 273.5 148 89.9
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 1.3e-71 273.1 151 86.8
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 1.3e-71 273.1 151 88.1
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 1.7e-71 272.7 148 89.9
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 1.7e-71 272.7 154 87.0
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 2.2e-71 272.3 148 88.5
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 2.2e-71 272.3 148 89.9
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 2.2e-71 272.3 148 89.2
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.2e-71 272.3 151 88.1
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 2.2e-71 272.3 151 88.7
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 2.2e-71 272.3 148 89.9
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 2.2e-71 272.3 148 89.9
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 2.9e-71 271.9 151 88.1
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 2.9e-71 271.9 148 89.2
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 2.9e-71 271.9 148 89.2
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 2.9e-71 271.9 152 86.2
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 2.9e-71 271.9 148 89.2
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 3.8e-71 271.6 148 89.2
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 3.8e-71 271.6 148 89.2
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.8e-71 271.6 153 86.3
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 3.8e-71 271.6 151 88.1
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.0e-71 271.2 151 86.8
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.0e-71 271.2 151 86.8
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.0e-71 271.2 151 86.8
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.0e-71 271.2 151 86.8
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 5.0e-71 271.2 148 89.2
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 5.0e-71 271.2 144 91.0
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 5.0e-71 271.2 151 86.8
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 5.0e-71 271.2 151 84.8
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 8.5e-71 270.4 154 87.0
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 8.5e-71 270.4 144 89.6
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 8.5e-71 270.4 148 88.5
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 8.5e-71 270.4 144 89.6
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 8.5e-71 270.4 144 89.6
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 8.5e-71 270.4 144 89.6
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 8.5e-71 270.4 144 89.6
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.1e-70 270.0 151 88.1
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 1.1e-70 270.0 148 87.8
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.1e-70 270.0 151 86.1
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.5e-70 269.6 148 86.5
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.5e-70 269.6 148 88.5
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.5e-70 269.6 148 88.5
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 1.5e-70 269.6 151 86.8
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.9e-70 269.2 148 88.5
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.9e-70 269.2 148 88.5
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 3.2e-70 268.5 148 87.8
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 4.2e-70 268.1 148 87.8
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 4.2e-70 268.1 148 87.8
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 4.2e-70 268.1 148 87.8
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 5.5e-70 267.7 152 85.5
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 1.2e-69 266.5 148 86.5
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 2.1e-69 265.8 148 86.5
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 4.7e-69 264.6 148 85.8
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 6.1e-69 264.2 143 88.1
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 6.8e-68 260.8 156 83.3
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.5e-67 259.6 143 87.4
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 4.9e-66 254.6 143 86.7
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 1.8e-65 252.7 138 87.0
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.2e-64 250.0 139 86.3
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 7.7e-64 247.3 190 70.5
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.3e-63 246.5 135 87.4
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.9e-62 242.7 132 89.4
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 7.2e-62 240.7 134 88.1
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.6e-61 239.6 128 89.8
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 1.6e-61 239.6 130 86.9
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 2.8e-61 238.8 150 78.7
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 3.6e-61 238.4 150 78.7
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 4.7e-61 238.0 131 87.0
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 6.1e-61 237.7 131 86.3
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 8.0e-61 237.3 132 85.6
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 1.8e-60 236.1 131 87.0
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 1.8e-60 236.1 131 87.0
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.8e-60 236.1 126 88.1
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.3e-60 235.7 146 80.1
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 2.3e-60 235.7 131 85.5
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.3e-60 235.7 124 88.7
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 2.3e-60 235.7 134 86.6
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.0e-60 235.3 131 87.0
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 3.0e-60 235.3 139 82.7
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 3.0e-60 235.3 130 86.2
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 3.0e-60 235.3 134 85.1
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 4.0e-60 235.0 145 78.6
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 5.2e-60 234.6 150 79.3
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.2e-59 233.4 140 81.4
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 3.4e-59 231.9 132 83.3
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 5.7e-59 231.1 132 84.1
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 7.5e-59 230.7 133 84.2
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 6.3e-58 227.6 146 71.2
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.4e-57 226.5 144 70.8
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 2.4e-57 225.7 143 76.9
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.0e-55 220.3 117 92.3
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 1.1e-54 216.9 142 71.8
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 1.0e-52 210.3 149 72.5
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.0e-48 196.1 144 70.8
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 4.6e-48 194.9 103 91.3
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 1.3e-47 193.4 103 89.3
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 8.6e-47 190.7 103 89.3
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 1.9e-46 189.5 119 74.8
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 1.8e-44 183.0 115 74.8
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 8.3e-42 174.1 115 79.1
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 3.0e-39 165.6 87 89.7
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 3.1e-36 155.6 81 93.8
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 6.4e-34 147.9 83 80.7
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 7.1e-33 144.4 85 82.4
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.1e-32 142.9 73 95.9
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.1e-30 137.1 149 53.7
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 9.9e-27 124.0 73 79.5
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.8e-26 122.1 71 84.5
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.2e-25 119.0 71 83.1
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.6e-24 116.7 71 81.7
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.6e-21 106.7 81 67.9
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 6.0e-16 88.2 45 95.6
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 5.6e-14 81.6 46 84.8
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 5.6e-14 81.6 74 58.1


User provided reference genes

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