Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.0e-275 951.8 478 100.0
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.2e-261 906.0 503 91.8
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 4.4e-259 897.5 499 91.4
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 3.1e-252 874.8 503 87.9
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 8.9e-252 873.2 502 88.0
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 1.5e-251 872.5 503 87.1
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 1.5e-251 872.5 503 87.7
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 1.5e-251 872.5 503 87.1
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 5.8e-251 870.5 503 87.9
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 9.9e-251 869.8 503 87.1
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 2.2e-250 868.6 503 87.5
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 6.4e-250 867.1 503 86.9
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 8.4e-250 866.7 503 86.3
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.4e-249 865.9 503 86.7
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 4.2e-249 864.4 503 86.9
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 9.3e-249 863.2 503 86.7
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 9.3e-249 863.2 503 86.3
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.2e-248 862.8 503 86.1
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 2.1e-248 862.1 503 86.9
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 2.1e-248 862.1 503 86.1
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 2.7e-248 861.7 503 86.1
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 3.5e-248 861.3 513 85.4
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 6.0e-248 860.5 499 87.0
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 1.3e-247 859.4 503 85.9
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 5.1e-247 857.4 503 85.5
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 1.1e-246 856.3 497 86.5
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 1.1e-246 856.3 503 85.3
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.1e-246 856.3 503 85.5
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 1.1e-246 856.3 503 85.7
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 1.5e-246 855.9 503 85.9
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 1.9e-246 855.5 503 85.3
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 1.9e-246 855.5 503 85.1
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 2.5e-246 855.1 503 85.5
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 3.3e-246 854.7 503 85.7
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 3.3e-246 854.7 503 85.3
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 5.6e-246 854.0 503 85.7
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 7.3e-246 853.6 503 85.1
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.3e-245 852.8 497 85.9
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 1.3e-245 852.8 503 85.5
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.6e-245 852.4 503 84.5
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 1.6e-245 852.4 503 85.5
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 3.6e-245 851.3 503 85.3
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 1.1e-244 849.7 503 84.5
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 1.4e-244 849.4 503 85.3
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 1.8e-244 849.0 503 84.1
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.8e-244 849.0 503 84.7
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 2.4e-244 848.6 503 85.1
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 2.4e-244 848.6 503 85.1
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 9.0e-244 846.7 503 84.7
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 2.0e-243 845.5 503 84.5
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 2.0e-243 845.5 503 84.1
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 2.0e-243 845.5 503 84.3
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 3.4e-243 844.7 503 83.5
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 4.4e-243 844.3 503 84.1
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 5.8e-243 844.0 503 84.3
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 7.6e-243 843.6 503 84.3
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 7.6e-243 843.6 503 84.3
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 1.3e-242 842.8 503 84.5
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 1.3e-242 842.8 503 83.3
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 1.3e-242 842.8 497 85.3
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 2.2e-242 842.0 503 83.7
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 4.9e-242 840.9 503 83.3
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 8.4e-242 840.1 503 83.5
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.1e-241 839.7 503 83.9
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 1.4e-241 839.3 503 83.1
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 3.2e-241 838.2 497 84.7
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 5.4e-241 837.4 503 82.9
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 7.1e-241 837.0 503 83.3
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 7.1e-241 837.0 503 83.5
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 9.3e-241 836.6 503 82.9
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.2e-240 836.3 503 83.1
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 1.6e-240 835.9 503 82.5
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 2.1e-240 835.5 503 82.9
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 4.6e-240 834.3 503 82.5
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 4.6e-240 834.3 503 82.7
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 7.8e-240 833.6 503 82.7
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 3.0e-239 831.6 502 82.7
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 3.0e-239 831.6 503 82.3
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 3.9e-239 831.2 503 82.3
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 8.7e-239 830.1 503 82.1
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 1.1e-238 829.7 503 82.5
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 1.1e-238 829.7 503 82.1
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 1.1e-238 829.7 503 82.1
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 1.1e-238 829.7 503 82.1
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 5.6e-238 827.4 503 81.9
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.1e-237 825.5 530 79.6
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 2.1e-237 825.5 503 82.1
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 6.9e-236 820.5 503 82.3
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 1.5e-235 819.3 503 80.5
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 2.6e-235 818.5 503 80.5
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 2.6e-235 818.5 503 80.5
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 2.6e-235 818.5 503 82.9
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 1.3e-234 816.2 503 81.3
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 2.2e-234 815.5 503 81.3
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 4.9e-234 814.3 503 80.3
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 4.9e-234 814.3 503 81.9
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 6.4e-234 813.9 503 80.1
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 8.4e-234 813.5 503 81.9
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 1.6e-232 809.3 503 79.9
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 4.3e-230 801.2 503 79.5
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 6.2e-229 797.3 503 78.7
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 9.0e-228 793.5 503 80.9
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 2.2e-226 788.9 503 78.1
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 1.4e-225 786.2 503 78.1
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 9.3e-225 783.5 503 79.5
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 1.6e-224 782.7 503 76.7
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 2.3e-215 752.3 503 74.6
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 8.7e-215 750.4 503 74.8
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 4.3e-214 748.0 503 73.4
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 1.3e-197 693.3 512 68.6
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 8.5e-194 680.6 407 85.0
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 7.2e-193 677.6 422 81.3
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 2.6e-190 669.1 504 67.5
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 8.2e-189 664.1 478 71.3
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 2.0e-174 616.3 365 85.2
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 4.9e-173 611.7 462 71.4
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 1.5e-169 600.1 506 61.5
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.1e-164 583.9 513 58.3
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.1e-159 565.8 446 68.4
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 5.4e-156 555.1 478 65.1
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 9.2e-156 554.3 354 80.5
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 5.0e-154 548.5 505 62.2
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 5.6e-153 545.0 367 75.5
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 3.4e-134 482.6 502 51.0
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.4e-103 380.2 237 81.0
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.4e-95 354.4 506 39.1
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 3.4e-86 323.2 181 88.4
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 1.0e-74 285.0 162 86.4
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 3.6e-67 260.0 144 88.2
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.3e-66 257.3 141 87.2
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 2.2e-64 250.8 206 64.6
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 1.9e-52 211.1 248 49.6
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 2.9e-40 170.6 99 83.8
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.1e-34 152.1 86 80.2
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 1.2e-33 148.7 91 80.2
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 3.4e-33 147.1 91 79.1
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.0e-29 135.6 74 81.1
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.5e-28 131.7 69 87.0
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 5.8e-25 119.8 67 83.6
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 2.4e-23 114.4 62 87.1
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 1.2e-22 112.1 71 76.1
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 2.3e-21 107.8 116 51.7
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 3.3e-20 104.0 53 94.3
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 4.0e-18 97.1 60 81.7
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 5.8e-17 93.2 63 65.1
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.8e-16 90.5 50 86.0
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 6.4e-16 89.7 51 82.4
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 8.4e-16 89.4 60 71.7
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 7.1e-15 86.3 49 81.6
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 7.3e-12 76.3 45 82.2
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 4.9e-08 63.5 87 44.8
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 1.4e-07 62.0 34 85.3


User provided reference genes

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