Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 0.0e+00 3234.1 1774 100.0
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 0.0e+00 2923.7 1691 92.8
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 2064.3 1839 67.4
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 0.0e+00 2025.4 1792 67.5
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 1526.1 1276 68.3
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1499.2 1711 55.8
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1499.2 1711 55.8
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 0.0e+00 1489.6 1698 53.7
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 0.0e+00 1431.8 1726 53.0
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 0.0e+00 1404.4 1743 51.3
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 0.0e+00 1390.6 1792 52.7
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 0.0e+00 1368.2 1692 51.5
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 0.0e+00 1353.6 1845 50.4
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 0.0e+00 1347.8 1737 49.8
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 0.0e+00 1313.5 1889 48.3
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 0.0e+00 1294.3 1828 49.8
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 0.0e+00 1290.4 1862 48.4
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 0.0e+00 1290.0 1862 48.2
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 0.0e+00 1276.2 1705 49.0
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 0.0e+00 1264.6 1715 47.8
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 0.0e+00 1221.1 1746 46.7
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 0.0e+00 1211.4 1845 45.0
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 0.0e+00 1208.7 1791 45.9
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1204.1 1707 46.4
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 0.0e+00 1199.9 1886 47.6
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 0.0e+00 1199.1 1759 46.5
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 0.0e+00 1169.8 1657 48.2
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 0.0e+00 1111.3 1811 43.6
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1107.8 1833 42.9
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 0.0e+00 1091.3 1829 42.6
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.6e-309 1067.0 1768 43.0
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 2.7e-309 1066.2 1708 43.8
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 4.6e-309 1065.4 1708 44.1
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 3.0e-308 1062.8 1694 43.2
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 1.9e-307 1060.1 1694 43.3
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 1.5e-304 1050.4 1725 43.3
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 9.8e-304 1047.7 1765 41.2
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 7.8e-301 1038.1 1715 43.6
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 2.3e-300 1036.6 1940 43.2
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 5.6e-299 1031.9 1698 43.5
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 6.2e-298 1028.5 1766 41.2
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 2.7e-293 1013.1 2096 38.2
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 3.5e-293 1012.7 1690 42.2
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 2.5e-291 1006.5 1764 40.1
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 2.9e-287 993.0 1780 40.5
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 5.4e-286 988.8 1750 41.1
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 7.1e-286 988.4 1785 39.8
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 6.0e-285 985.3 1711 42.0
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 1.1e-283 981.1 1750 40.7
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 1.2e-282 977.6 1698 41.5
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 3.6e-282 976.1 1726 41.6
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 2.4e-281 973.4 1731 41.5
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 4.0e-281 972.6 1749 41.4
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 8.4e-279 964.9 1761 39.7
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 3.0e-276 956.4 1690 42.1
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 1.3e-274 951.0 1756 40.7
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 6.4e-271 938.7 1766 40.3
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 1.9e-270 937.2 1710 40.9
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 3.5e-269 932.9 1786 39.2
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 2.8e-266 923.3 1680 41.0
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.6e-261 907.5 1580 41.8
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 4.3e-259 899.4 1865 40.4
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 5.8e-256 889.0 1771 38.6
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 2.7e-253 880.2 1699 40.2
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 6.7e-252 875.5 1717 38.2
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 5.9e-248 862.4 1703 39.6
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 6.3e-242 842.4 1687 39.8
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.4e-233 814.7 1753 38.0
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 1.8e-233 814.3 1827 38.9
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 2.0e-232 810.8 1184 45.9
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.1e-230 805.1 1707 38.0
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.0e-228 798.5 1780 35.4
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 1.0e-228 798.5 1725 36.8
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 9.4e-222 775.4 1712 37.0
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 4.4e-219 766.5 1679 36.9
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 5.3e-217 759.6 1472 40.2
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 2.4e-209 734.2 964 46.7
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 5.9e-208 729.6 1728 35.1
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 6.8e-204 716.1 1701 35.5
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.2e-189 666.4 792 49.2
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.9e-182 644.8 1718 33.7
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 4.0e-180 637.1 1717 33.7
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 1.3e-178 632.1 981 46.2
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 1.1e-172 612.5 881 44.9
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 2.5e-166 591.3 1432 36.4
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 2.5e-166 591.3 1432 36.4
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 9.6e-166 589.3 1438 36.4
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 2.5e-158 564.7 1683 32.2
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 3.4e-155 554.3 920 44.5
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 9.9e-147 526.2 862 44.7
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.4e-145 522.3 835 40.6
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 9.6e-142 509.6 915 40.0
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.0e-135 489.6 632 54.4
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.6e-112 412.5 446 48.0
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 4.2e-105 387.9 625 49.8
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.0e-102 379.0 911 37.7
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 2.2e-98 365.5 801 36.8
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 9.4e-97 360.1 914 36.7
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 1.5e-94 352.8 842 38.5
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 4.5e-91 341.3 1082 28.9
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.2e-85 322.4 677 35.0
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 9.2e-84 317.0 641 34.6
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 4.7e-80 304.7 357 62.5
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 4.4e-78 298.1 473 39.3
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 5.8e-78 297.7 1652 25.5
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 7.5e-78 297.4 1087 35.2
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.3e-77 296.6 505 43.2
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 1.9e-76 292.7 1725 25.5
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 6.0e-75 287.7 1105 26.8
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 4.6e-67 261.5 637 40.5
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 3.0e-66 258.8 803 34.9
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 6.6e-66 257.7 423 41.8
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 3.4e-62 245.4 235 53.2
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 4.3e-57 228.4 240 50.0
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 4.7e-56 224.9 237 49.4
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.8e-55 223.0 163 73.6
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 2.6e-54 219.2 234 53.0
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 1.3e-53 216.9 187 55.6
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.7e-53 216.5 231 54.1
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 7.8e-51 207.6 197 55.3
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 9.6e-49 200.7 146 61.6
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 4.5e-38 165.2 984 28.4
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 5.8e-38 164.9 146 61.6
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 4.9e-37 161.8 198 46.5
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 8.4e-37 161.0 683 31.5
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 3.2e-36 159.1 658 30.7
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 1.2e-35 157.1 93 76.3
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 1.6e-32 146.7 144 52.8
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 2.1e-32 146.4 883 27.7
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 1.4e-31 143.7 140 51.4
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.9e-29 135.2 217 40.6
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.4e-23 117.1 329 30.4
CSS0009629 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 1.8e-23 116.7 374 34.2
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 7.6e-22 111.3 81 65.4
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 4.6e-19 102.1 183 32.2
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 5.1e-18 98.6 92 53.3
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.7e-18 98.2 69 65.2
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 2.5e-17 96.3 246 28.0
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 9.7e-17 94.4 69 63.8
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 8.2e-16 91.3 63 65.1
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 2.4e-15 89.7 70 65.7
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 4.1e-15 89.0 114 54.4
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 9.0e-15 87.8 61 65.6
Cpa.g.sc119.17 Carica papaya HOM05D004493 ORTHO05D005117 2.0e-14 86.7 301 33.9
Potri.001G001250 Populus trichocarpa HOM05D004493 ORTHO05D005117 3.8e-13 82.4 375 31.2
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 8.5e-13 81.3 404 34.4
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.9e-11 74.7 212 27.8
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 1.5e-09 70.5 104 39.4
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 4.8e-08 65.5 59 50.8
RcHm_v2.0_Chr7g0214951 Rosa chinensis HOM05D004493 ORTHO05D005117 8.2e-08 64.7 60 55.0
Gohir.A07G008001 Gossypium hirsutum HOM05D036473 ORTHO05D036031 1.2e-06 60.8 90 34.4
Gorai.001G008300 Gossypium raimondii HOM05D036473 ORTHO05D036031 5.9e-06 58.5 87 34.5


User provided reference genes

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