Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009462 Carpinus fangiana HOM05D000233 ORTHO05D000020 1.5e-110 402.9 215 100.0
Haze_12519 Corylus avellana HOM05D000233 ORTHO05D000020 1.5e-102 376.3 214 94.9
CiPaw.05G099500 Carya illinoinensis HOM05D000233 ORTHO05D000020 1.7e-72 276.6 214 67.8
QL03p048555 Quercus lobata HOM05D000233 ORTHO05D000020 6.6e-61 238.0 221 61.1
CiPaw.06G110700 Carya illinoinensis HOM05D000233 ORTHO05D000020 2.1e-59 233.0 215 60.0
Thecc.02G189700 Theobroma cacao HOM05D000233 ORTHO05D000020 1.5e-57 226.9 221 58.8
Duzib248G0476 Durio zibethinus HOM05D000233 ORTHO05D000020 2.8e-51 206.1 218 54.1
COL.COLO4_08103 Corchorus olitorius HOM05D000233 ORTHO05D000020 1.3e-48 197.2 224 51.8
Duzib052G0759 Durio zibethinus HOM05D000233 ORTHO05D000020 5.4e-47 191.8 202 56.4
Duzib132G0373 Durio zibethinus HOM05D000233 ORTHO05D000020 1.1e-42 177.6 205 53.7
MD13G1132900 Malus domestica HOM05D000233 ORTHO05D000020 2.3e-42 176.4 218 50.5
Manes.08G099800 Manihot esculenta HOM05D000233 ORTHO05D000020 4.0e-42 175.6 220 47.7
Prupe.1G212700 Prunus persica HOM05D000233 ORTHO05D000020 5.2e-42 175.3 217 49.3
Atru.chr12.1450 Acer truncatum HOM05D000233 ORTHO05D000020 1.4e-39 167.2 234 51.3
Atru.chr12.1451 Acer truncatum HOM05D000233 ORTHO05D000020 1.4e-39 167.2 234 51.3
Gorai.005G197800 Gossypium raimondii HOM05D000233 ORTHO05D000020 1.9e-39 166.8 218 48.6
Gohir.A03G153300 Gossypium hirsutum HOM05D000233 ORTHO05D000020 2.4e-39 166.4 218 48.6
Gohir.D02G176100 Gossypium hirsutum HOM05D000233 ORTHO05D000020 2.4e-39 166.4 218 48.6
Gorai.008G155600 Gossypium raimondii HOM05D000233 ORTHO05D000020 9.2e-39 164.5 221 50.7
Nn4g22095 Nelumbo nucifera HOM05D000233 ORTHO05D000020 9.2e-39 164.5 221 48.0
FAN07G1891 Fragaria x ananassa HOM05D000233 ORTHO05D000020 2.1e-38 163.3 222 49.1
FAN17G0983 Fragaria x ananassa HOM05D000233 ORTHO05D000020 2.7e-38 162.9 220 49.5
FAN12G0487 Fragaria x ananassa HOM05D000233 ORTHO05D000020 3.5e-38 162.5 225 48.4
FvH4_4g22310 Fragaria vesca HOM05D000233 ORTHO05D000020 4.6e-38 162.2 226 48.2
Gohir.A12G139800 Gossypium hirsutum HOM05D000233 ORTHO05D000020 1.7e-37 160.2 221 48.0
Gohir.D12G144300 Gossypium hirsutum HOM05D000233 ORTHO05D000020 1.7e-37 160.2 224 48.7
TWI75G1295 Tripterygium wilfordii HOM05D000233 ORTHO05D000020 1.1e-36 157.5 215 46.5
MD16G1143300 Malus domestica HOM05D000233 ORTHO05D000020 1.9e-36 156.8 223 46.6
Potri.003G161000 Populus trichocarpa HOM05D000233 ORTHO05D000020 3.3e-36 156.0 225 44.4
TAR622G0911 Trochodendron aralioides HOM05D000233 ORTHO05D000020 3.3e-36 156.0 230 47.0
Sabra03G0117000 Salix brachista HOM05D000233 ORTHO05D000020 1.2e-35 154.1 224 43.8
RcHm_v2.0_Chr4g0428551 Rosa chinensis HOM05D000233 ORTHO05D000020 2.8e-35 152.9 221 48.0
Potri.001G069300 Populus trichocarpa HOM05D000233 ORTHO05D000020 8.1e-35 151.4 226 45.1
TAR374G0948 Trochodendron aralioides HOM05D000233 ORTHO05D000020 1.7e-32 143.7 225 44.4
Eucgr.B03565 Eucalyptus grandis HOM05D000233 ORTHO05D000020 3.8e-32 142.5 234 42.7
Sabra01G0048600 Salix brachista HOM05D000233 ORTHO05D000020 5.4e-31 138.7 221 43.9
PGR102G1083 Punica granatum HOM05D000233 ORTHO05D000020 4.3e-28 129.0 226 42.9
Nn3g16240 Nelumbo nucifera HOM05D000233 ORTHO05D000020 9.6e-28 127.9 224 42.0
TWI36G1562 Tripterygium wilfordii HOM05D000233 ORTHO05D000020 1.1e-26 124.4 191 43.5
GSVIVG01032961001 Vitis vinifera HOM05D000233 ORTHO05D000020 6.4e-24 115.2 217 39.2
Manes.04G094600 Manihot esculenta HOM05D000233 ORTHO05D000020 1.1e-23 114.4 229 39.3
PSO017G0851 Papaver somniferum HOM05D000233 ORTHO05D000020 1.4e-23 114.0 235 38.3
Thecc.04G050300 Theobroma cacao HOM05D000233 ORTHO05D000020 4.2e-23 112.5 228 39.0
Sed0018904 Sechium edule HOM05D000233 ORTHO05D000020 7.1e-23 111.7 214 37.9
PSO478G4612 Papaver somniferum HOM05D000233 ORTHO05D000020 1.6e-22 110.5 236 38.1
Sabra01G0134300 Salix brachista HOM05D000233 ORTHO05D000020 7.8e-22 108.2 225 40.4
Atru.chr6.2716 Acer truncatum HOM05D000233 ORTHO05D000020 1.0e-21 107.8 229 40.2
Lj7P618T61 Lonicera japonica HOM05D000233 ORTHO05D000020 1.0e-21 107.8 220 40.0
Ciclev10017494m.g Citrus clementina HOM05D000233 ORTHO05D000020 1.3e-21 107.5 233 39.1
Lalb_Chr02g0156891 Lupinus albus HOM05D000233 ORTHO05D000020 1.1e-20 104.4 218 39.4
Sc09g0000430 Simmondsia chinensis HOM05D000233 ORTHO05D000020 1.1e-20 104.4 222 37.8
PSO478G0626 Papaver somniferum HOM05D000233 ORTHO05D000020 1.5e-20 104.0 236 38.6
Glyma.02G067600 Glycine max HOM05D000233 ORTHO05D000020 1.9e-20 103.6 233 36.1
Manes.11G074500 Manihot esculenta HOM05D000233 ORTHO05D000020 5.6e-20 102.1 230 37.4
Aqoxy6G01377 Aquilegia oxysepala HOM05D000233 ORTHO05D000020 7.3e-20 101.7 224 39.7
MELO3C017826.2 Cucumis melo HOM05D000233 ORTHO05D000020 7.3e-20 101.7 215 38.1
Manes.09G173200 Manihot esculenta HOM05D000233 ORTHO05D000020 7.3e-20 101.7 214 37.4
Phvul.004G068900 Phaseolus vulgaris HOM05D000233 ORTHO05D000020 7.3e-20 101.7 240 35.0
Sed0018263 Sechium edule HOM05D000233 ORTHO05D000020 7.3e-20 101.7 214 36.4
ClCG07G012050 Citrullus lanatus HOM05D000233 ORTHO05D000020 1.3e-19 100.9 217 36.4
Oeu021930.1 Olea europaea HOM05D000233 ORTHO05D000020 1.3e-19 100.9 172 43.6
Aqoxy5G03022 Aquilegia oxysepala HOM05D000233 ORTHO05D000020 1.6e-19 100.5 223 39.9
PSO017G1380 Papaver somniferum HOM05D000233 ORTHO05D000020 1.6e-19 100.5 236 38.1
PSO017G4101 Papaver somniferum HOM05D000233 ORTHO05D000020 1.6e-19 100.5 239 37.7
Glyma.16G148700 Glycine max HOM05D000233 ORTHO05D000020 6.2e-19 98.6 233 35.6
QL02p068779 Quercus lobata HOM05D000233 ORTHO05D000020 8.1e-19 98.2 223 35.0
Potri.003G077700 Populus trichocarpa HOM05D000233 ORTHO05D000020 5.3e-18 95.5 223 36.3
Potri.001G157100 Populus trichocarpa HOM05D000233 ORTHO05D000020 2.0e-17 93.6 237 35.0
Cpa.g.sc70.47 Carica papaya HOM05D000233 ORTHO05D000020 2.6e-17 93.2 224 36.2
CsaV3_4G002090 Cucumis sativus L. HOM05D000233 ORTHO05D000020 2.6e-17 93.2 215 37.7
vmacro01008 Vaccinium macrocarpon HOM05D000233 ORTHO05D000020 2.9e-16 89.7 239 36.8
Dinv33266 Davidia involucrata HOM05D000233 ORTHO05D000020 8.4e-16 88.2 234 35.9
Rhsim12G0016000 Rhododendron simsii HOM05D000233 ORTHO05D000020 8.4e-16 88.2 254 41.3
VMungo0464G0249 Vigna mungo HOM05D000233 ORTHO05D000020 1.1e-15 87.8 242 37.6
DCAR_014458 Daucus carota HOM05D000233 ORTHO05D000020 1.4e-15 87.4 222 32.9
Eucgr.I01576 Eucalyptus grandis HOM05D000233 ORTHO05D000020 1.4e-15 87.4 226 33.6
PGR142G0308 Punica granatum HOM05D000233 ORTHO05D000020 1.4e-15 87.4 225 34.2
SalBow2G0847 Salvia bowleyana HOM05D000233 ORTHO05D000020 1.4e-15 87.4 194 38.1
arahy.Tifrunner.gnm1.ann1.2RQ41J Arachis hypogaea HOM05D000233 ORTHO05D000020 6.7e-13 78.6 238 29.0
Haze_14962 Corylus avellana HOM05D000233 ORTHO05D000020 8.7e-13 78.2 215 33.0
Aa31LG11G15450 Aethionema arabicum HOM05D000233 ORTHO05D000020 7.4e-12 75.1 219 30.6
HanXRQChr10g0296261 Helianthus annuus HOM05D000233 ORTHO05D000020 7.4e-12 75.1 232 32.3
Sabra03G0048000 Salix brachista HOM05D000233 ORTHO05D000020 9.6e-12 74.7 220 32.7
EL10Ac6g13894 Beta vulgaris HOM05D000233 ORTHO05D000020 1.3e-11 74.3 218 31.2
arahy.Tifrunner.gnm1.ann1.K3BVMJ Arachis hypogaea HOM05D000233 ORTHO05D000020 2.1e-11 73.6 234 31.6
ECA234G1669 Erigeron canadensis HOM05D000233 ORTHO05D000020 2.8e-11 73.2 248 32.7
Migut.K01126 Erythranthe guttata HOM05D000233 ORTHO05D000020 2.8e-11 73.2 190 35.8
Ciclev10006460m.g Citrus clementina HOM05D000233 ORTHO05D000020 4.8e-11 72.4 226 35.0
COL.COLO4_13395 Corchorus olitorius HOM05D000233 ORTHO05D000020 1.4e-10 70.9 205 30.7
Ah.04g161730 Amaranthus hybridus HOM05D000233 ORTHO05D000020 6.9e-10 68.6 201 34.8
Actinidia09850 Actinidia chinensis HOM05D000233 ORTHO05D000020 9.0e-10 68.2 235 28.5
Carub.0001s2659 Capsella rubella HOM05D000233 ORTHO05D000020 4.5e-09 65.9 44 77.3
MBI07_g07561_MAGBIO Magnolia biondii HOM05D000233 ORTHO05D000020 5.8e-09 65.5 224 30.4
BcaC05g26823 Brassica carinata HOM05D000233 ORTHO05D000020 7.6e-09 65.1 183 34.4
BolC5t31415H Brassica oleracea HOM05D000233 ORTHO05D000020 7.6e-09 65.1 183 34.4
Hma1.2p1_0738F.1_g210850 Hydrangea macrophylla HOM05D000233 ORTHO05D000020 7.6e-09 65.1 145 36.6
AT1G28160 Arabidopsis thaliana HOM05D000233 ORTHO05D000020 9.9e-09 64.7 130 36.9
PSO478G3207 Papaver somniferum HOM05D000233 ORTHO05D000020 9.9e-09 64.7 57 64.9
BcaB03g13948 Brassica carinata HOM05D000233 ORTHO05D000020 1.7e-08 63.9 43 76.7
BcaC01g00009 Brassica carinata HOM05D000233 ORTHO05D000020 1.7e-08 63.9 86 46.5
C03p74770 Brassica napus HOM05D000233 ORTHO05D000020 1.7e-08 63.9 86 46.5
A07p11440 Brassica napus HOM05D000233 ORTHO05D000020 2.2e-08 63.5 81 49.4
BraA07t28932Z Brassica rapa HOM05D000233 ORTHO05D000020 2.2e-08 63.5 81 49.4
Sp1g24350 Schrenkiella parvula HOM05D000233 ORTHO05D000020 2.2e-08 63.5 192 33.9
BcaC06g35339 Brassica carinata HOM05D000233 ORTHO05D000020 2.9e-08 63.2 81 48.1
C05p26960 Brassica napus HOM05D000233 ORTHO05D000020 2.9e-08 63.2 184 34.8
C07p17230 Brassica napus HOM05D000233 ORTHO05D000020 2.9e-08 63.2 81 48.1
BolC7t42227H Brassica oleracea HOM05D000233 ORTHO05D000020 2.9e-08 63.2 81 48.1
CARHR027630 Cardamine hirsuta HOM05D000233 ORTHO05D000020 2.9e-08 63.2 130 36.9
AL1G41690 Arabidopsis lyrata HOM05D000233 ORTHO05D000020 3.8e-08 62.8 43 72.1
A08p25850 Brassica napus HOM05D000233 ORTHO05D000020 3.8e-08 62.8 80 46.2
A09p37880 Brassica napus HOM05D000233 ORTHO05D000020 3.8e-08 62.8 187 34.8
Dinv26266 Davidia involucrata HOM05D000233 ORTHO05D000020 3.8e-08 62.8 154 44.8
Thhalv10009328m.g Eutrema salsugineum HOM05D000233 ORTHO05D000020 3.8e-08 62.8 45 75.6
BcaB03g12133 Brassica carinata HOM05D000233 ORTHO05D000020 4.9e-08 62.4 190 34.7
BraA08t34540Z Brassica rapa HOM05D000233 ORTHO05D000020 6.4e-08 62.0 80 46.2
BcaB07g32426 Brassica carinata HOM05D000233 ORTHO05D000020 8.4e-08 61.6 74 51.4
BraA09t39300Z Brassica rapa HOM05D000233 ORTHO05D000020 1.1e-07 61.2 187 34.2
Aa31sc50G60 Aethionema arabicum HOM05D000233 ORTHO05D000020 1.4e-07 60.8 52 59.6
CSS0034110 Camellia sinensis var. sinensis HOM05D000233 ORTHO05D000020 2.4e-07 60.1 77 45.5
BolC3t13226H Brassica oleracea HOM05D000233 ORTHO05D000020 4.2e-07 59.3 206 33.0
C03p07250 Brassica napus HOM05D000233 ORTHO05D000020 5.5e-07 58.9 206 31.1
Lj1g0018283 Lotus japonicus HOM05D000233 ORTHO05D000020 7.1e-07 58.5 190 35.8
ATR0582G089 Amborella trichopoda HOM05D000233 ORTHO05D000020 1.2e-06 57.8 244 31.6
SGA_v2.0_scaffold80G25952 Striga asiatica HOM05D000233 ORTHO05D000020 1.2e-06 57.8 32 84.4
THA.LOC104814685 Tarenaya hassleriana HOM05D000233 ORTHO05D000020 1.2e-06 57.8 209 31.1
AUR62042857 Chenopodium quinoa HOM05D000233 ORTHO05D000020 1.6e-06 57.4 90 46.7
Cc11_g14890 Coffea canephora HOM05D000233 ORTHO05D000020 1.6e-06 57.4 30 90.0
AUR62017475 Chenopodium quinoa HOM05D000233 ORTHO05D000020 2.1e-06 57.0 90 43.3
THA.LOC104812607 Tarenaya hassleriana HOM05D000233 ORTHO05D000020 2.1e-06 57.0 88 39.8


User provided reference genes

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