Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 6.2e-70 267.3 131 100.0
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 6.2e-70 267.3 131 100.0
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 5.4e-58 227.6 129 84.5
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.3e-48 196.4 130 73.1
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 1.1e-47 193.4 130 71.5
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.0e-44 182.6 130 68.5
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.1e-37 160.2 127 63.0
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 6.9e-37 157.5 132 57.6
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 8.1e-30 134.0 125 52.8
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 4.0e-29 131.7 124 54.0
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.2e-28 130.2 131 48.1
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 5.8e-28 127.9 131 46.6
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 5.8e-28 127.9 127 48.0
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 9.9e-28 127.1 123 49.6
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.7e-27 126.3 131 47.3
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.7e-27 126.3 131 46.6
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 4.9e-27 124.8 130 46.2
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 6.4e-27 124.4 126 50.8
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 6.4e-27 124.4 127 50.4
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 8.4e-27 124.0 130 46.9
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.4e-26 123.2 127 50.4
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 1.9e-26 122.9 130 48.5
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.9e-26 122.9 130 48.5
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.2e-26 122.1 132 43.9
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 1.2e-25 120.2 114 46.5
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.2e-25 120.2 131 45.0
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 3.5e-25 118.6 127 48.8
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 4.6e-25 118.2 126 48.4
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 4.6e-25 118.2 128 43.0
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 6.0e-25 117.9 127 44.9
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 7.9e-25 117.5 128 44.5
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 1.3e-24 116.7 123 46.3
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 1.8e-24 116.3 131 42.0
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 1.8e-24 116.3 131 44.3
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 1.8e-24 116.3 132 44.7
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.3e-24 115.9 127 44.1
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 3.0e-24 115.5 131 44.3
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 3.9e-24 115.2 127 48.0
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 8.7e-24 114.0 125 47.2
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 2.5e-23 112.5 135 43.0
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 3.3e-23 112.1 122 41.8
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 4.3e-23 111.7 126 44.4
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 7.4e-23 110.9 130 38.5
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 9.6e-23 110.5 130 41.5
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 2.8e-22 109.0 131 39.7
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 6.2e-22 107.8 116 49.1
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 6.2e-22 107.8 133 45.9
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 8.1e-22 107.5 120 46.7
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 8.1e-22 107.5 130 40.8
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 8.1e-22 107.5 129 41.9
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 1.1e-21 107.1 134 43.3
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.4e-21 106.7 125 44.0
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 1.4e-21 106.7 128 42.2
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 1.8e-21 106.3 129 41.1
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 3.1e-21 105.5 128 40.6
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 3.1e-21 105.5 134 41.0
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 5.3e-21 104.8 139 41.0
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 5.3e-21 104.8 128 43.0
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 9.0e-21 104.0 128 38.3
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 9.0e-21 104.0 122 42.6
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 1.2e-20 103.6 127 38.6
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 1.5e-20 103.2 97 52.6
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 1.5e-20 103.2 129 39.5
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 2.0e-20 102.8 130 41.5
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 3.4e-20 102.1 128 42.2
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 5.8e-20 101.3 127 39.4
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 1.0e-19 100.5 138 38.4
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.7e-19 99.8 126 40.5
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 8.4e-19 97.4 122 41.8
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 1.1e-18 97.1 122 41.8
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.4e-18 96.7 132 39.4
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.4e-18 96.7 127 40.2
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 1.4e-18 96.7 127 40.2
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 1.9e-18 96.3 127 39.4
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 2.5e-18 95.9 128 43.8
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 4.2e-18 95.1 126 36.5
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 4.2e-18 95.1 126 36.5
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 5.5e-18 94.7 136 43.4
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 7.1e-18 94.4 124 37.1
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 9.3e-18 94.0 127 39.4
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 9.3e-18 94.0 135 39.3
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 9.3e-18 94.0 130 34.6
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.2e-17 93.6 133 35.3
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 1.2e-17 93.6 131 41.2
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 2.7e-17 92.4 134 39.6
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 2.7e-17 92.4 131 35.1
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 4.6e-17 91.7 123 41.5
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 6.0e-17 91.3 128 35.9
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 7.9e-17 90.9 131 40.5
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 1.0e-16 90.5 128 42.2
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 1.3e-16 90.1 127 36.2
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 1.8e-16 89.7 127 35.4
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 3.0e-16 89.0 133 34.6
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 3.0e-16 89.0 133 40.6
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 3.0e-16 89.0 126 34.1
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 3.9e-16 88.6 128 39.8
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 5.1e-16 88.2 127 36.2
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 5.1e-16 88.2 126 34.9
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 6.7e-16 87.8 126 39.7
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 1.5e-15 86.7 129 38.0
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 1.5e-15 86.7 122 35.2
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 4.3e-15 85.1 118 36.4
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 9.6e-15 84.0 128 37.5
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 1.3e-14 83.6 138 34.1
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 2.1e-14 82.8 128 38.3
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 4.8e-14 81.6 134 32.8
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 4.8e-14 81.6 134 32.8
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 4.8e-14 81.6 114 39.5
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 1.1e-13 80.5 134 32.1
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 1.1e-13 80.5 134 32.1
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 1.1e-13 80.5 128 37.5
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 1.4e-13 80.1 134 32.8
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 1.8e-13 79.7 134 32.1
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 4.1e-13 78.6 138 37.7
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 5.3e-13 78.2 114 34.2
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 1.5e-12 76.6 128 34.4
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 1.5e-12 76.6 98 42.9
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 2.6e-12 75.9 149 36.2
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 8.4e-11 70.9 126 35.7
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 1.1e-10 70.5 105 38.1
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 2.5e-10 69.3 115 34.8
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 7.9e-09 64.3 135 29.6
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 1.1e-07 60.5 128 30.5
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 1.5e-07 60.1 80 33.8
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.5e-07 59.3 64 42.2
unitig_8.g2925 Utricularia gibba HOM05D004907 ORTHO05D005707 2.5e-07 59.3 94 35.1
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 3.3e-07 58.9 103 35.9


User provided reference genes

Program Settings