Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 3.7e-224 781.2 379 100.0
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 2.1e-211 738.8 379 94.7
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.1e-154 550.4 368 70.7
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 1.9e-151 539.7 375 67.7
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 3.5e-150 535.4 366 69.7
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.1e-146 523.9 376 65.7
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 5.3e-130 468.4 369 61.5
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 1.2e-126 457.2 373 57.1
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 2.4e-122 443.0 368 59.8
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 2.0e-121 439.9 367 58.3
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 2.0e-121 439.9 374 56.7
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 5.8e-121 438.3 353 58.4
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 7.6e-121 438.0 359 57.9
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 1.7e-120 436.8 366 53.8
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 4.9e-120 435.3 366 56.0
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 3.2e-119 432.6 367 55.3
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 7.1e-119 431.4 379 53.3
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 6.0e-118 428.3 363 57.9
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 6.0e-118 428.3 362 56.6
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.3e-117 427.2 361 57.1
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 3.0e-117 426.0 370 54.9
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 3.9e-117 425.6 366 54.9
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 5.1e-117 425.2 366 54.6
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.9e-116 423.3 369 56.9
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.9e-116 423.3 375 55.7
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.3e-116 422.5 366 54.4
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 5.6e-116 421.8 369 56.6
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 5.6e-116 421.8 361 57.1
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 9.6e-116 421.0 359 56.8
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 9.6e-116 421.0 367 53.7
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 2.8e-115 419.5 367 53.1
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 1.4e-114 417.2 368 53.8
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 1.8e-114 416.8 369 55.0
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.4e-114 416.4 366 53.6
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 3.1e-114 416.0 358 55.9
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 9.0e-114 414.5 368 51.6
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.0e-112 411.0 371 53.1
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 4.9e-112 408.7 371 54.4
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 6.5e-112 408.3 367 51.0
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 2.7e-110 402.9 373 55.0
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 2.7e-110 402.9 367 52.9
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 7.9e-110 401.4 371 53.1
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 1.3e-109 400.6 370 53.2
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 1.3e-109 400.6 359 55.4
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 3.0e-109 399.4 369 50.9
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 1.3e-107 394.0 370 52.2
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 2.2e-107 393.3 371 51.8
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.4e-106 389.8 374 50.5
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 2.4e-106 389.8 361 50.4
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 5.3e-106 388.7 395 49.1
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 1.2e-105 387.5 372 51.6
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.0e-105 386.7 371 49.6
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 4.5e-105 385.6 370 50.5
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 2.2e-104 383.3 360 51.7
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 8.5e-104 381.3 351 52.4
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.4e-103 380.6 371 49.6
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 2.5e-103 379.8 391 49.1
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 7.2e-103 378.3 364 49.7
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 9.3e-103 377.9 368 49.5
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 3.6e-102 375.9 370 50.3
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 7.9e-102 374.8 365 50.1
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 1.4e-101 374.0 373 49.1
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 3.0e-101 372.9 360 51.7
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 5.1e-101 372.1 375 48.0
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 6.7e-101 371.7 373 47.7
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.5e-100 370.5 366 50.3
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 1.5e-100 370.5 365 48.5
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.9e-100 370.2 374 48.9
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 3.3e-100 369.4 366 49.2
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 5.7e-100 368.6 377 48.8
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 4.8e-99 365.5 361 51.0
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 4.8e-99 365.5 371 48.5
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 2.4e-98 363.2 349 48.4
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 4.1e-98 362.5 307 55.4
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 5.3e-98 362.1 360 49.7
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 3.4e-97 359.4 368 49.5
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 4.5e-97 359.0 363 49.0
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 5.5e-95 352.1 363 47.4
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 1.2e-94 350.9 359 49.6
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 2.7e-94 349.7 378 50.3
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 1.0e-93 347.8 379 45.9
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 2.3e-93 346.7 377 47.2
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 3.9e-93 345.9 369 48.5
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 6.7e-93 345.1 368 47.8
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 1.1e-92 344.4 381 45.4
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 3.7e-91 339.3 369 47.7
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 3.7e-91 339.3 379 47.2
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 4.8e-91 339.0 360 47.2
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 4.8e-91 339.0 360 47.2
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 1.4e-90 337.4 366 47.3
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 9.1e-90 334.7 362 45.6
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 2.0e-89 333.6 373 46.1
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 2.6e-89 333.2 366 44.8
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 3.4e-89 332.8 372 46.5
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 5.9e-89 332.0 374 46.3
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 5.9e-89 332.0 380 45.8
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 7.7e-89 331.6 380 45.8
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 1.7e-88 330.5 373 42.9
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 3.8e-88 329.3 374 44.7
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 2.5e-87 326.6 258 59.3
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 3.2e-87 326.2 377 45.9
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 3.2e-87 326.2 364 44.8
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 4.2e-87 325.9 367 46.3
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 1.2e-86 324.3 391 46.5
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 4.7e-86 322.4 367 42.5
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 1.0e-85 321.2 358 44.4
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 1.4e-85 320.9 360 46.9
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 5.7e-84 315.5 372 44.4
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 3.7e-83 312.8 371 44.7
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 3.7e-83 312.8 375 42.7
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 6.3e-83 312.0 372 45.4
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 1.4e-82 310.8 374 42.8
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 5.3e-82 308.9 266 53.0
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 2.6e-81 306.6 374 43.3
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 5.0e-80 302.4 372 43.5
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 4.2e-79 299.3 244 57.0
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 6.1e-78 295.4 270 49.3
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 1.4e-77 294.3 363 43.3
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 1.4e-77 294.3 358 43.0
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 3.0e-77 293.1 374 40.9
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 5.7e-76 288.9 268 48.9
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 4.5e-73 279.3 373 39.4
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.3e-72 277.7 233 57.5
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 1.2e-70 271.2 290 45.2
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 2.7e-70 270.0 359 42.1
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 1.5e-68 264.2 319 39.5
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 3.5e-65 253.1 264 49.2
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 4.5e-65 252.7 292 43.8
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 3.6e-62 243.0 363 35.8
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 1.7e-56 224.2 215 47.9
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 5.8e-52 209.1 215 46.0
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 4.9e-51 206.1 188 54.3
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 5.0e-48 196.1 130 73.1
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 5.0e-48 196.1 184 53.8
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.6e-44 183.7 203 42.9
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 6.0e-41 172.6 191 48.2
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 3.6e-38 163.3 380 31.3
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 2.2e-35 154.1 396 30.1
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 2.9e-35 153.7 364 29.4
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 2.8e-30 137.1 157 42.7
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 3.5e-25 120.2 373 26.0
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.0e-24 118.6 256 33.2
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 1.7e-24 117.9 114 49.1
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 8.7e-24 115.5 343 28.9
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 4.7e-22 109.8 388 24.0
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 1.1e-21 108.6 361 24.4
Oeu015462.1 Olea europaea HOM05D007853 ORTHO05D009873 3.1e-21 107.1 373 23.3
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 6.9e-21 105.9 358 24.3
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 9.0e-21 105.5 379 24.0
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 2.6e-20 104.0 319 26.0
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 7.6e-20 102.4 377 26.3
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 9.9e-20 102.1 380 24.7
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 9.9e-20 102.1 380 24.7
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.2e-19 100.9 300 25.7
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 2.2e-19 100.9 85 52.9
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 4.9e-19 99.8 91 52.7
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 6.4e-19 99.4 371 23.2
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 1.4e-18 98.2 369 24.1
AT3G24760 Arabidopsis thaliana HOM05D007853 ORTHO05D009873 7.1e-18 95.9 364 23.6
HanXRQChr01g0014671 Helianthus annuus HOM05D007853 ORTHO05D009873 6.0e-17 92.8 394 22.6
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 5.1e-16 89.7 79 50.6
PGR044G1509 Punica granatum HOM05D007853 ORTHO05D009873 1.9e-15 87.8 387 24.0
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 4.3e-15 86.7 370 22.4
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 7.6e-12 75.9 333 22.8
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.1e-10 72.0 362 22.1
CiPaw.11G008800 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.4e-10 70.9 67 52.2
unitig_8.g2925 Utricularia gibba HOM05D004907 ORTHO05D005707 1.2e-09 68.6 93 39.8
Mapoly0098s0011 Marchantia polymorpha HOM05D007853 ORTHO05D009873 3.5e-09 67.0 311 25.1
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 1.8e-08 64.7 93 37.6
SMO304G0062 Selaginella moellendorffii HOM05D003005 ORTHO05D004170 3.9e-08 63.5 363 23.1
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 5.6e-07 59.7 88 39.8
Os02g0260200 Oryza sativa ssp. japonica HOM05D003005 ORTHO05D004170 5.6e-07 59.7 355 23.9
Actinidia08148 Actinidia chinensis HOM05D004907 ORTHO05D005707 4.8e-06 56.6 63 46.0


User provided reference genes

Program Settings