Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.5e-70 269.6 162 100.0
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 4.0e-63 245.0 168 89.3
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.5e-49 199.9 189 64.6
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 4.8e-40 168.3 138 66.7
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.5e-38 163.3 154 63.0
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 3.4e-38 162.2 144 63.9
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 7.7e-38 161.0 145 67.6
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.3e-37 160.2 137 69.3
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.9e-37 159.1 188 55.3
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 8.5e-37 157.5 195 55.9
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 8.5e-37 157.5 135 66.7
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.9e-36 156.4 144 66.0
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 1.9e-36 156.4 149 63.1
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 2.5e-36 156.0 145 62.1
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 4.2e-36 155.2 145 63.4
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 5.5e-36 154.8 135 67.4
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 5.5e-36 154.8 135 68.1
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 5.5e-36 154.8 189 52.9
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.1e-35 152.9 133 65.4
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 2.1e-35 152.9 133 65.4
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 4.7e-35 151.8 195 53.8
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 2.3e-34 149.4 136 62.5
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 2.3e-34 149.4 144 62.5
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.0e-33 146.4 142 59.2
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 2.6e-33 146.0 122 68.9
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 2.6e-33 146.0 140 67.1
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 7.4e-33 144.4 106 74.5
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.7e-32 143.3 141 59.6
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 3.1e-31 139.0 144 59.7
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 3.1e-31 139.0 117 63.2
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 3.1e-31 139.0 140 57.1
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 7.0e-31 137.9 140 57.1
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 3.5e-30 135.6 103 71.8
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 5.9e-30 134.8 135 63.0
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 5.9e-30 134.8 135 63.0
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 7.7e-30 134.4 134 59.7
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.0e-29 134.0 184 50.5
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 2.2e-24 116.3 83 73.5
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.8e-24 115.9 157 49.0
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 2.8e-24 115.9 131 54.2
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 2.8e-24 115.9 131 54.2
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 6.3e-24 114.8 137 61.3
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 6.3e-24 114.8 111 56.8
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 1.4e-23 113.6 110 58.2
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 1.4e-23 113.6 194 53.1
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 4.1e-23 112.1 93 65.6
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 4.1e-23 112.1 93 65.6
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.2e-22 110.5 93 64.5
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 1.6e-22 110.2 146 51.4
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 4.5e-22 108.6 107 59.8
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 5.9e-22 108.2 136 52.9
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 2.9e-21 105.9 95 61.1
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 5.0e-21 105.1 135 51.9
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 8.5e-21 104.4 192 40.6
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.5e-20 102.8 160 45.0
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 4.2e-20 102.1 142 50.0
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 1.2e-19 100.5 132 52.3
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 4.0e-18 95.5 74 70.3
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 2.6e-17 92.8 91 65.9
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 6.3e-16 88.2 110 48.2
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.4e-15 87.0 103 45.6
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 2.4e-15 86.3 126 43.7
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 3.1e-15 85.9 100 46.0
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 7.0e-15 84.7 107 46.7
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 9.1e-15 84.3 95 50.5
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 1.2e-14 84.0 87 54.0
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.2e-14 84.0 87 54.0
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.2e-14 84.0 87 54.0
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 1.2e-14 84.0 118 44.9
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 1.2e-14 84.0 112 44.6
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.7e-14 82.8 89 52.8
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 2.7e-14 82.8 116 43.1
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.5e-14 82.4 87 51.7
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 3.5e-14 82.4 89 51.7
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 4.5e-14 82.0 128 43.0
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 5.9e-14 81.6 98 46.9
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 5.9e-14 81.6 107 44.9
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.0e-13 80.9 87 50.6
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.0e-13 80.9 87 49.4
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 1.0e-13 80.9 85 52.9
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.0e-13 80.9 130 41.5
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.3e-13 80.5 89 48.3
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 1.3e-13 80.5 89 47.2
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.7e-13 80.1 91 47.3
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.7e-13 80.1 89 46.1
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 1.7e-13 80.1 136 42.6
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 1.7e-13 80.1 112 43.8
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 2.9e-13 79.3 89 49.4
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.9e-13 79.3 107 45.8
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 2.9e-13 79.3 111 43.2
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 3.8e-13 79.0 87 49.4
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 5.0e-13 78.6 105 44.8
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 5.0e-13 78.6 161 38.5
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 5.0e-13 78.6 110 42.7
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 5.0e-13 78.6 89 44.9
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 5.0e-13 78.6 102 47.1
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 8.5e-13 77.8 105 43.8
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.1e-12 77.4 87 47.1
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.1e-12 77.4 89 46.1
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 1.1e-12 77.4 87 48.3
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.9e-12 76.6 98 45.9
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.9e-12 76.6 140 39.3
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 1.9e-12 76.6 91 45.1
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 2.5e-12 76.3 82 57.3
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.5e-12 76.3 89 46.1
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.5e-12 76.3 89 46.1
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 3.2e-12 75.9 89 48.3
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.2e-12 75.9 89 46.1
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 3.2e-12 75.9 140 35.7
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 4.2e-12 75.5 102 43.1
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 5.5e-12 75.1 87 46.0
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 5.5e-12 75.1 92 45.7
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 7.2e-12 74.7 89 46.1
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 7.2e-12 74.7 144 34.0
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 7.2e-12 74.7 124 41.1
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 7.2e-12 74.7 180 32.2
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 9.5e-12 74.3 89 46.1
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 9.5e-12 74.3 89 46.1
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 9.5e-12 74.3 89 46.1
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 9.5e-12 74.3 89 46.1
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 9.5e-12 74.3 110 41.8
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 9.5e-12 74.3 127 39.4
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 1.6e-11 73.6 87 46.0
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 2.1e-11 73.2 87 47.1
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 2.1e-11 73.2 87 47.1
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 2.1e-11 73.2 87 47.1
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 2.1e-11 73.2 87 47.1
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 2.1e-11 73.2 87 47.1
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 2.1e-11 73.2 180 31.1
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 2.7e-11 72.8 142 35.9
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 4.7e-11 72.0 105 41.9
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 6.1e-11 71.6 106 42.5
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 6.1e-11 71.6 86 46.5
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 6.1e-11 71.6 106 42.5
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 8.0e-11 71.2 113 38.9
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 1.4e-10 70.5 105 41.0
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 1.8e-10 70.1 179 30.2
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.0e-09 66.6 163 35.6
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 4.4e-09 65.5 70 52.9
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.3e-08 63.9 106 38.7
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 2.8e-08 62.8 61 57.4
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 4.9e-08 62.0 63 54.0
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 1.4e-07 60.5 137 33.6
TWI36G1524 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 1.8e-07 60.1 74 56.8
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 4.1e-07 58.9 98 38.8
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 1.6e-06 57.0 129 36.4
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 2.0e-06 56.6 105 38.1
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 4.5e-06 55.5 74 44.6
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 4.5e-06 55.5 69 49.3
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 5.9e-06 55.1 68 48.5
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 7.7e-06 54.7 90 40.0


User provided reference genes

Program Settings