Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 2255.7 1394 100.0
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 0.0e+00 2049.2 1486 85.8
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1550.4 1401 68.5
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1549.3 1434 69.9
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1542.3 1334 71.7
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1360.1 1428 64.9
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1269.2 1421 61.0
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 0.0e+00 1258.8 1422 60.6
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 0.0e+00 1255.7 1424 61.3
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1244.2 1423 60.2
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1244.2 1422 59.9
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 0.0e+00 1236.5 1439 60.0
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 0.0e+00 1234.6 1427 59.8
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1230.7 1422 59.6
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 0.0e+00 1230.3 1464 57.3
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 0.0e+00 1220.3 1380 57.2
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1218.0 1418 58.3
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1213.7 1447 58.7
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 0.0e+00 1211.4 1414 59.4
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1181.8 1458 57.3
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 0.0e+00 1180.6 1419 58.8
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 0.0e+00 1178.3 1490 56.2
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1172.9 1493 54.7
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 0.0e+00 1162.1 1434 57.0
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 0.0e+00 1160.6 1420 55.8
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 0.0e+00 1147.5 1536 54.0
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 0.0e+00 1137.9 1443 54.3
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 0.0e+00 1123.6 1441 57.9
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 0.0e+00 1122.8 1500 53.8
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 0.0e+00 1115.5 1506 54.7
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 0.0e+00 1114.8 1442 56.0
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 0.0e+00 1094.0 1507 52.9
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 0.0e+00 1092.0 1447 54.5
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 0.0e+00 1084.7 1477 53.9
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 0.0e+00 1078.5 1476 53.8
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 6.7e-311 1071.2 1483 52.8
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 8.6e-311 1070.8 1477 55.7
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 1.4e-308 1063.5 1500 51.8
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 3.0e-308 1062.4 1469 55.1
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 6.3e-306 1054.7 1443 53.9
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 3.1e-305 1052.4 1520 52.1
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 1.0e-303 1047.3 1455 53.6
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 1.2e-301 1040.4 1447 54.9
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 6.8e-300 1034.6 1517 49.5
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 9.1e-297 1024.2 1518 49.9
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 4.4e-291 1005.4 1435 53.1
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 4.1e-289 998.8 1431 49.5
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 7.3e-286 988.0 1444 49.2
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 3.2e-281 972.6 1435 47.4
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 4.1e-281 972.2 1501 50.6
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.9e-278 963.4 1440 49.4
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 6.2e-277 958.4 1479 47.0
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 6.0e-272 941.8 1454 49.0
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 2.8e-269 932.9 1440 49.3
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 1.1e-268 931.0 1254 52.8
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 1.5e-267 927.2 1416 50.2
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 1.2e-264 917.5 1428 49.9
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 1.0e-263 914.4 1441 48.8
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.9e-262 910.2 713 72.9
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 4.3e-262 909.1 1461 51.2
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 5.2e-260 902.1 1436 50.0
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 8.9e-260 901.4 1676 43.4
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 9.9e-259 897.9 1489 45.6
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 2.2e-258 896.7 1445 49.2
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.2e-256 891.0 1409 46.2
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 4.8e-253 879.0 1537 46.8
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 5.3e-252 875.5 1347 48.6
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 6.0e-248 862.1 1238 52.3
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 8.1e-245 851.7 1459 46.7
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.1e-244 851.3 1504 44.2
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 1.1e-238 831.2 1439 46.2
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 9.6e-238 828.2 1460 47.5
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 3.1e-236 823.2 1481 44.8
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 1.5e-235 820.8 1489 46.0
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 3.5e-232 809.7 1433 46.3
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 3.1e-228 796.6 1236 47.6
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.7e-226 790.8 1491 43.8
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 4.6e-224 782.7 1462 47.1
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 3.9e-223 779.6 1489 43.8
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 1.6e-221 774.2 1497 43.0
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 8.2e-221 771.9 1464 46.0
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 6.9e-220 768.8 1443 47.1
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 8.5e-218 761.9 1436 47.2
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 8.5e-218 761.9 1436 47.2
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 2.5e-217 760.4 1444 47.0
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 2.3e-215 753.8 1429 43.8
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 2.5e-214 750.4 1447 47.3
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 4.1e-212 743.0 1475 45.6
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 2.6e-211 740.3 1453 42.9
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 1.4e-209 734.6 1457 43.0
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 5.3e-204 716.1 1054 45.7
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 7.0e-204 715.7 1386 44.6
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 4.2e-201 706.4 1391 47.2
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 5.0e-194 682.9 1461 41.1
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 4.8e-189 666.4 1447 40.5
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.8e-183 647.9 578 68.2
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 3.7e-165 587.0 1424 40.6
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 1.1e-159 568.9 1220 35.7
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 6.2e-152 543.1 1281 37.9
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 1.5e-150 538.5 1508 36.7
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 9.9e-150 535.8 1383 34.8
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 5.4e-140 503.4 1248 38.5
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 1.3e-138 498.8 753 46.6
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 4.2e-132 477.2 636 50.2
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 4.8e-128 463.8 1501 36.7
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 1.0e-122 446.0 1273 34.5
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 3.7e-96 357.8 1431 35.2
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 2.1e-83 315.5 795 44.4
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 3.3e-81 308.1 425 58.8
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 7.7e-70 270.4 1506 26.7
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 1.1e-63 250.0 258 57.4
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 1.5e-60 239.6 730 33.2
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 9.5e-60 236.9 273 41.4
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.6e-59 236.1 1350 26.7
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 1.0e-58 233.4 1526 25.8
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 1.9e-52 212.6 1177 28.2
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 1.9e-39 169.5 374 44.1
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.0e-37 163.7 175 52.0
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 1.1e-36 160.2 474 41.8
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 2.1e-35 156.0 330 39.4
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 3.1e-34 152.1 92 77.2
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 4.0e-34 151.8 295 47.1
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 5.2e-34 151.4 281 44.8
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 6.9e-26 124.4 131 58.0
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 5.8e-25 121.3 291 38.5
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.1e-22 112.8 280 46.1
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 4.6e-22 111.7 102 52.0
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 7.8e-22 110.9 132 50.0
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 1.3e-21 110.2 353 40.5
Atru.chr11.1749 Acer truncatum HOM05D004594 ORTHO05D005225 1.8e-18 99.8 148 51.4
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 2.4e-18 99.4 71 62.0
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 4.0e-18 98.6 64 79.7
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 5.3e-18 98.2 69 68.1
QL03p068157 Quercus lobata HOM05D004594 ORTHO05D005225 4.5e-17 95.1 153 48.4
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 5.8e-17 94.7 122 50.8
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 9.9e-17 94.0 257 38.1
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 2.4e-15 89.4 61 63.9
Actinidia04098 Actinidia chinensis HOM05D004594 ORTHO05D005225 9.3e-15 87.4 235 40.9
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 2.1e-14 86.3 311 24.1
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 3.9e-13 82.0 77 48.1
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.9e-12 79.7 50 70.0
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 4.3e-12 78.6 46 76.1
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 3.7e-11 75.5 154 37.0
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 3.7e-11 75.5 302 30.5
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 3.1e-10 72.4 89 49.4
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.0e-10 72.0 103 42.7
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 6.9e-10 71.2 54 66.7
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 9.0e-10 70.9 50 62.0
Oeu052406.1 Olea europaea HOM05D004594 ORTHO05D005225 3.4e-09 68.9 92 51.1
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 9.9e-09 67.4 58 55.2
Nn3g17298 Nelumbo nucifera HOM05D004594 ORTHO05D005225 1.3e-08 67.0 69 49.3
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.4e-07 63.5 66 54.5


User provided reference genes

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