Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 6.0e-153 544.3 300 100.0
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.9e-127 459.5 300 83.0
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 5.1e-112 408.3 255 79.6
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.3e-102 377.1 298 63.4
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 4.5e-100 368.6 254 70.5
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.9e-98 363.2 297 61.3
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 2.5e-98 362.8 255 69.0
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 7.2e-98 361.3 254 68.1
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 7.2e-98 361.3 258 67.8
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 9.4e-98 360.9 299 63.9
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.0e-96 357.5 254 66.9
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 5.1e-96 355.1 296 61.5
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 2.2e-94 349.7 255 67.5
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 2.2e-94 349.7 255 66.3
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 4.8e-94 348.6 267 65.5
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.4e-93 346.3 296 59.5
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 2.4e-93 346.3 297 59.3
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 3.1e-93 345.9 297 57.9
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 3.1e-93 345.9 254 65.7
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 4.1e-93 345.5 258 65.5
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 4.1e-93 345.5 251 65.3
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.5e-92 343.6 256 64.8
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 5.9e-92 341.7 255 66.3
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.7e-91 340.1 304 57.2
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.1e-90 337.4 282 64.2
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 5.5e-90 335.1 258 65.1
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 1.6e-89 333.6 254 64.2
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 4.7e-89 332.0 254 63.0
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 3.9e-88 328.9 254 63.4
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.0e-87 326.6 298 55.4
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.0e-87 326.6 298 55.4
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 4.4e-87 325.5 258 63.2
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 5.7e-87 325.1 299 57.9
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 5.7e-87 325.1 251 62.9
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.3e-86 323.9 273 61.2
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 2.2e-86 323.2 297 54.5
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.8e-86 322.8 254 61.4
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 4.8e-86 322.0 258 60.1
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 6.3e-86 321.6 251 62.5
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 8.2e-86 321.2 254 60.2
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.1e-85 319.3 257 61.9
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 7.0e-85 318.2 257 61.5
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.2e-84 317.4 254 59.8
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.2e-84 317.4 258 59.3
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 4.5e-84 315.5 254 60.2
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 7.7e-84 314.7 253 62.1
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.0e-83 314.3 296 54.7
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.3e-83 313.9 254 60.6
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.7e-83 313.5 249 63.1
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 2.9e-83 312.8 305 53.8
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.5e-82 310.5 256 60.9
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 7.2e-82 308.1 250 59.2
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 7.2e-82 308.1 255 58.8
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.2e-81 307.4 287 53.7
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 6.1e-81 305.1 254 56.7
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 8.0e-81 304.7 255 58.4
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.3e-80 303.1 254 59.1
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 3.0e-80 302.8 249 57.0
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.0e-80 302.4 251 57.4
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 1.5e-79 300.4 186 79.6
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 2.0e-79 300.1 260 58.5
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 4.4e-79 298.9 249 58.2
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 4.4e-79 298.9 239 60.7
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 5.7e-79 298.5 249 58.2
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.7e-78 297.0 254 53.9
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 2.2e-78 296.6 251 54.2
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.7e-78 295.8 254 57.9
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 3.7e-78 295.8 254 59.4
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.1e-77 294.3 268 55.6
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 1.1e-77 294.3 256 55.1
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.2e-76 290.8 248 57.7
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.7e-76 289.7 265 54.7
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 2.7e-76 289.7 243 58.4
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 3.5e-76 289.3 266 52.6
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 3.5e-76 289.3 249 54.6
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.5e-76 289.3 249 55.4
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 3.5e-76 289.3 384 43.0
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 1.7e-75 287.0 251 54.2
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 2.2e-75 286.6 251 55.0
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 2.9e-75 286.2 251 55.0
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 5.0e-75 285.4 282 50.0
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 5.0e-75 285.4 254 56.3
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 8.5e-75 284.6 249 58.2
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.1e-74 284.3 235 60.4
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.5e-74 283.9 251 53.8
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 3.6e-73 279.3 248 56.9
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 3.6e-73 279.3 251 53.4
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.4e-72 277.3 296 49.3
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.0e-71 273.5 255 53.3
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.6e-71 273.1 260 50.8
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 4.4e-71 272.3 252 53.6
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 5.7e-71 271.9 228 59.6
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 7.5e-71 271.6 260 53.8
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 7.5e-71 271.6 260 53.8
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.2e-70 270.0 260 53.5
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 4.8e-70 268.9 301 46.5
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 3.1e-69 266.2 344 42.2
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.1e-69 266.2 260 52.7
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.0e-68 263.5 300 47.0
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 7.7e-68 261.5 255 54.9
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 7.7e-68 261.5 214 59.8
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 2.2e-67 260.0 253 48.6
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 8.5e-67 258.1 251 52.6
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.1e-66 257.7 253 47.8
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.1e-66 257.7 253 47.8
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 3.2e-66 256.1 251 52.2
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.8e-64 250.4 244 50.4
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 2.3e-59 233.4 243 49.4
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 2.3e-59 233.4 174 63.2
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 6.6e-59 231.9 251 44.6
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 8.6e-59 231.5 187 58.8
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.1e-57 226.9 256 46.5
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.0e-56 224.6 185 58.4
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.3e-56 223.4 251 49.8
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 4.0e-56 222.6 174 61.5
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 2.2e-54 216.9 210 54.3
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.0e-51 208.0 202 52.0
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.4e-48 197.6 141 68.1
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.7e-44 183.3 238 43.3
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 7.8e-44 181.8 182 53.3
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.5e-42 177.6 247 40.5
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.6e-41 174.1 154 54.5
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.0e-39 167.2 182 46.2
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.6e-39 166.8 256 39.1
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 2.2e-38 163.7 140 53.6
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.9e-38 163.3 166 49.4
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 4.9e-38 162.5 329 32.5
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.2e-37 159.8 149 53.0
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.5e-36 156.4 125 61.6
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 4.6e-36 156.0 419 31.0
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 3.9e-35 152.9 104 67.3
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.3e-32 143.7 168 47.0
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.0e-31 140.6 128 51.6
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 1.7e-30 137.5 244 34.4
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 4.9e-30 136.0 197 40.1
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 1.1e-29 134.8 246 33.3
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 6.0e-28 129.0 210 34.8
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.9e-27 126.3 139 44.6
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 2.8e-25 120.2 243 30.0
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 6.9e-24 115.5 87 66.7
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 6.9e-24 115.5 146 43.8
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.9e-24 115.5 222 33.8
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 2.4e-21 107.1 146 41.1
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 2.4e-21 107.1 146 41.1
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.1e-20 104.0 224 32.1
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.6e-17 94.4 75 57.3
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.1e-17 94.0 66 68.2
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 2.1e-17 94.0 65 63.1
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 5.3e-16 89.4 61 68.9
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.0e-15 87.4 67 65.7
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 5.8e-15 85.9 95 44.2
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 7.6e-15 85.5 204 29.9
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 6.4e-14 82.4 87 44.8
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 6.4e-14 82.4 133 36.1
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 6.0e-12 75.9 273 27.1
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 1.0e-11 75.1 119 35.3
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 2.5e-10 70.5 134 35.8
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 6.2e-09 65.9 41 68.3
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 1.4e-08 64.7 80 45.0
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 1.5e-07 61.2 65 38.5
BraA09t40093Z Brassica rapa HOM05D004374 ORTHO05D005430 2.6e-07 60.5 53 58.5
MCO01G198 Micromonas commoda HOM05D004374 ORTHO05D005430 2.9e-06 57.0 165 30.3


User provided reference genes

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