Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008772 Carpinus fangiana HOM05D000515 ORTHO05D043631 6.2e-32 140.2 72 100.0
Haze_06536 Corylus avellana HOM05D000515 ORTHO05D001911 1.8e-26 122.1 66 93.9
Cfa000389 Carpinus fangiana HOM05D000515 ORTHO05D001911 5.7e-25 117.1 66 90.9
CiPaw.10G045300 Carya illinoinensis HOM05D000515 ORTHO05D001911 4.6e-19 97.4 65 75.4
QL05p037607 Quercus lobata HOM05D000515 ORTHO05D001911 3.9e-18 94.4 66 72.7
Rhsim02G0122200 Rhododendron simsii HOM05D000515 ORTHO05D001911 1.8e-15 85.5 66 62.1
Haze_11785 Corylus avellana HOM05D000515 ORTHO05D043631 9.0e-15 83.2 47 91.5
CSS0009463 Camellia sinensis var. sinensis HOM05D000515 ORTHO05D001911 2.6e-14 81.6 66 60.6
vmacro03832 Vaccinium macrocarpon HOM05D000515 ORTHO05D001911 5.9e-14 80.5 66 57.6
RcHm_v2.0_Chr5g0007521 Rosa chinensis HOM05D000515 ORTHO05D001911 1.0e-13 79.7 66 56.1
Prupe.4G040600 Prunus persica HOM05D000515 ORTHO05D001911 1.7e-13 79.0 66 59.1
TAR629G0275 Trochodendron aralioides HOM05D000515 ORTHO05D001911 1.7e-13 79.0 65 60.0
TAR627G0646 Trochodendron aralioides HOM05D000515 ORTHO05D001911 2.9e-13 78.2 65 60.0
MBI02_g19246_MAGBIO Magnolia biondii HOM05D000515 ORTHO05D001911 5.0e-13 77.4 65 56.9
Potri.004G037700 Populus trichocarpa HOM05D000515 ORTHO05D001911 8.5e-13 76.6 65 58.5
vmacro15882 Vaccinium macrocarpon HOM05D000515 ORTHO05D001911 1.1e-12 76.3 65 58.5
ClCG01G022760 Citrullus lanatus HOM05D000515 ORTHO05D001911 1.4e-12 75.9 66 59.1
Lalb_Chr16g0383481 Lupinus albus HOM05D000515 ORTHO05D001911 1.4e-12 75.9 66 59.1
TWI63G0042 Tripterygium wilfordii HOM05D000515 ORTHO05D001911 1.9e-12 75.5 66 59.1
Dinv39784 Davidia involucrata HOM05D000515 ORTHO05D001911 2.5e-12 75.1 66 57.6
Dinv40523 Davidia involucrata HOM05D000515 ORTHO05D001911 2.5e-12 75.1 66 57.6
Lalb_Chr15g0089931 Lupinus albus HOM05D000515 ORTHO05D001911 2.5e-12 75.1 66 57.6
MD05G1322200 Malus domestica HOM05D000515 ORTHO05D001911 3.2e-12 74.7 66 54.5
Gohir.D06G129400 Gossypium hirsutum HOM05D000515 ORTHO05D001911 4.2e-12 74.3 66 59.1
Gorai.010G151100 Gossypium raimondii HOM05D000515 ORTHO05D001911 4.2e-12 74.3 66 59.1
Potri.011G046400 Populus trichocarpa HOM05D000515 ORTHO05D001911 4.2e-12 74.3 63 58.7
MD10G1300200 Malus domestica HOM05D000515 ORTHO05D001911 5.5e-12 73.9 66 54.5
Glyma.13G243600 Glycine max HOM05D000515 ORTHO05D001911 7.2e-12 73.6 66 59.1
arahy.Tifrunner.gnm1.ann1.2PFX68 Arachis hypogaea HOM05D000515 ORTHO05D001911 1.2e-11 72.8 66 57.6
Sed0007774 Sechium edule HOM05D000515 ORTHO05D001911 1.2e-11 72.8 67 59.7
Atru.chr10.1965 Acer truncatum HOM05D000515 ORTHO05D001911 1.6e-11 72.4 69 56.5
MELO3C007305.2 Cucumis melo HOM05D000515 ORTHO05D001911 1.6e-11 72.4 66 57.6
CsaV3_6G049920 Cucumis sativus L. HOM05D000515 ORTHO05D001911 1.6e-11 72.4 66 57.6
Duzib235G0251 Durio zibethinus HOM05D000515 ORTHO05D001911 1.6e-11 72.4 66 59.1
Gohir.A06G124700 Gossypium hirsutum HOM05D000515 ORTHO05D001911 2.1e-11 72.0 66 59.1
Phvul.002G224601 Phaseolus vulgaris HOM05D000515 ORTHO05D001911 3.6e-11 71.2 63 58.7
Sabra11G0032100 Salix brachista HOM05D000515 ORTHO05D001911 3.6e-11 71.2 65 56.9
Ciclev10014042m.g Citrus clementina HOM05D000515 ORTHO05D001911 6.1e-11 70.5 68 52.9
Glyma.13G183900 Glycine max HOM05D000515 ORTHO05D001911 7.9e-11 70.1 66 54.5
Glyma.15G070100 Glycine max HOM05D000515 ORTHO05D001911 7.9e-11 70.1 66 59.1
arahy.Tifrunner.gnm1.ann1.AUP71V Arachis hypogaea HOM05D000515 ORTHO05D001911 1.0e-10 69.7 66 56.1
Manes.17G041600 Manihot esculenta HOM05D000515 ORTHO05D001911 1.4e-10 69.3 63 54.0
VMungo0251G2324 Vigna mungo HOM05D000515 ORTHO05D001911 1.4e-10 69.3 66 54.5
Sed0015098 Sechium edule HOM05D000515 ORTHO05D001911 1.8e-10 68.9 74 51.4
ATR0693G151 Amborella trichopoda HOM05D000515 ORTHO05D001911 2.3e-10 68.6 66 51.5
Thecc.06G194300 Theobroma cacao HOM05D000515 ORTHO05D001911 3.0e-10 68.2 65 58.5
Lalb_Chr05g0218291 Lupinus albus HOM05D000515 ORTHO05D001911 3.9e-10 67.8 66 54.5
Lj6g0019255 Lotus japonicus HOM05D000515 ORTHO05D001911 5.1e-10 67.4 66 54.5
Ca_00302_v3 Cicer arietinum L. HOM05D000515 ORTHO05D001911 6.7e-10 67.0 66 56.1
FAN21G1232 Fragaria x ananassa HOM05D000515 ORTHO05D001911 6.7e-10 67.0 67 52.2
Lj2A283T67 Lonicera japonica HOM05D000515 ORTHO05D001911 6.7e-10 67.0 65 53.8
Nn1g03965 Nelumbo nucifera HOM05D000515 ORTHO05D001911 6.7e-10 67.0 66 54.5
Actinidia39439 Actinidia chinensis HOM05D000515 ORTHO05D001911 1.1e-09 66.2 65 56.9
COL.COLO4_31531 Corchorus olitorius HOM05D000515 ORTHO05D001911 1.1e-09 66.2 48 66.7
VMungo0540G1319 Vigna mungo HOM05D000515 ORTHO05D001911 1.1e-09 66.2 66 53.0
FvH4_3g04580 Fragaria vesca HOM05D000515 ORTHO05D001911 1.5e-09 65.9 67 50.7
FAN11G1907 Fragaria x ananassa HOM05D000515 ORTHO05D001911 1.5e-09 65.9 67 50.7
Gohir.A05G163000 Gossypium hirsutum HOM05D000515 ORTHO05D001911 3.3e-09 64.7 69 53.6
TWI38G1977 Tripterygium wilfordii HOM05D000515 ORTHO05D001911 3.3e-09 64.7 65 53.8
CAN.G289.32 Capsicum annuum HOM05D000515 ORTHO05D001911 4.3e-09 64.3 65 53.8
FAN16G3470 Fragaria x ananassa HOM05D000515 ORTHO05D001911 4.3e-09 64.3 67 50.7
Gohir.D05G165800 Gossypium hirsutum HOM05D000515 ORTHO05D001911 4.3e-09 64.3 70 52.9
Gorai.009G171000 Gossypium raimondii HOM05D000515 ORTHO05D001911 4.3e-09 64.3 70 52.9
Phvul.006G189200 Phaseolus vulgaris HOM05D000515 ORTHO05D001911 4.3e-09 64.3 66 53.0
FAN25G3493 Fragaria x ananassa HOM05D000515 ORTHO05D001911 7.4e-09 63.5 67 49.3
Actinidia05602 Actinidia chinensis HOM05D000515 ORTHO05D001911 9.7e-09 63.2 64 51.6
Peaxi162Scf00137g00313 Petunia axillaris HOM05D000515 ORTHO05D001911 1.3e-08 62.8 65 55.4
CANSAT35G1828 Cannabis sativa HOM05D000515 ORTHO05D001911 2.2e-08 62.0 64 53.1
Aqoxy4G01272 Aquilegia oxysepala HOM05D000515 ORTHO05D001911 3.7e-08 61.2 60 50.0
PGR004G0211 Punica granatum HOM05D000515 ORTHO05D001911 6.3e-08 60.5 69 47.8
Solyc03g006570.3 Solanum lycopersicum HOM05D000515 ORTHO05D001911 1.1e-07 59.7 65 55.4
Medtr2g012830 Medicago truncatula HOM05D000515 ORTHO05D001911 1.4e-07 59.3 66 48.5
Sopen03g002560 Solanum pennellii HOM05D000515 ORTHO05D001911 2.4e-07 58.5 65 53.8
Cpa.g.sc27.89 Carica papaya HOM05D000515 ORTHO05D001911 3.1e-07 58.2 69 46.4
Glyma.07G192500 Glycine max HOM05D000515 ORTHO05D001911 3.1e-07 58.2 66 51.5
Nitab4.5_0002066g0010 Nicotiana tabacum HOM05D000515 ORTHO05D001911 3.1e-07 58.2 65 52.3
Sc05g0007920 Simmondsia chinensis HOM05D000515 ORTHO05D001911 5.3e-07 57.4 65 50.8
Psat5g106280 Pisum sativum HOM05D000515 ORTHO05D002678 6.9e-07 57.0 66 47.0
Nitab4.5_0001833g0020 Nicotiana tabacum HOM05D000515 ORTHO05D001911 9.1e-07 56.6 65 52.3
PSO210G0014 Papaver somniferum HOM05D000515 ORTHO05D001911 1.5e-06 55.8 67 47.8
Duzib192G0670 Durio zibethinus HOM05D000515 ORTHO05D001911 2.0e-06 55.5 66 48.5
Nn1g06684 Nelumbo nucifera HOM05D000515 ORTHO05D001911 2.6e-06 55.1 66 50.0
Oeu050836.1 Olea europaea HOM05D000515 ORTHO05D001911 2.6e-06 55.1 63 54.0
PSO832G2094 Papaver somniferum HOM05D000515 ORTHO05D001911 2.6e-06 55.1 66 40.9
Actinidia01916 Actinidia chinensis HOM05D000515 ORTHO05D019468 4.5e-06 54.3 60 50.0
SalBow7G0123 Salvia bowleyana HOM05D000515 ORTHO05D001911 4.5e-06 54.3 65 47.7
SEGI_10641 Sequoiadendron giganteum HOM05D000515 ORTHO05D001911 4.5e-06 54.3 63 52.4
TPR.G36760 Trifolium pratense HOM05D000515 ORTHO05D001911 4.5e-06 54.3 66 51.5
unitig_21.g20223 Utricularia gibba HOM05D000515 ORTHO05D001911 4.5e-06 54.3 65 46.2
Zm00001eb369880 Zea mays HOM05D000515 ORTHO05D001911 5.9e-06 53.9 64 46.9
Thhalv10023220m.g Eutrema salsugineum HOM05D000515 ORTHO05D001911 7.7e-06 53.5 50 50.0


User provided reference genes

Program Settings