Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 8.2e-222 773.5 409 100.0
Haze_13708 Corylus avellana HOM05D004189 ORTHO05D004092 1.7e-89 334.0 396 53.8
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 2.7e-71 273.5 606 38.4
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 9.6e-61 238.4 611 36.3
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 5.1e-54 216.1 597 35.2
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 2.2e-49 200.7 590 34.1
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 8.4e-49 198.7 604 34.3
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.1e-48 198.4 613 34.1
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.1e-48 198.4 489 38.0
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.6e-47 194.5 593 33.7
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 5.6e-45 186.0 593 33.2
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 8.1e-44 182.2 505 33.1
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 6.9e-43 179.1 297 44.1
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 9.9e-42 175.3 457 36.3
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 9.9e-42 175.3 595 32.4
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.1e-39 167.5 508 33.5
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 7.9e-39 165.6 606 32.0
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.5e-37 161.4 549 30.6
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 8.1e-36 155.6 515 31.7
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 8.1e-36 155.6 526 31.0
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.1e-35 155.2 499 31.5
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 5.3e-35 152.9 564 32.4
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 9.0e-35 152.1 321 39.3
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.9e-32 144.4 512 36.5
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 2.5e-32 144.1 329 35.9
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.2e-32 143.7 305 39.3
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.6e-31 141.4 307 38.8
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 1.3e-30 138.3 670 27.9
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 3.0e-30 137.1 330 33.9
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 3.9e-30 136.7 345 34.2
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 8.7e-30 135.6 493 32.3
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 2.1e-28 131.0 337 33.2
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 2.8e-28 130.6 574 29.3
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 6.2e-28 129.4 412 32.8
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.1e-27 126.7 354 32.8
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 6.9e-27 125.9 611 27.3
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 9.0e-27 125.6 340 32.6
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.3e-25 121.7 323 40.6
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 1.4e-24 118.2 296 35.8
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.9e-24 117.9 600 26.7
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 4.2e-24 116.7 378 31.0
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.6e-23 114.8 673 26.9
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 7.9e-23 112.5 375 31.7
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.8e-22 111.3 318 34.0
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 6.7e-22 109.4 401 31.2
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 3.3e-21 107.1 503 30.2
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 3.3e-21 107.1 413 31.7
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 5.7e-21 106.3 398 30.2
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 9.7e-21 105.5 364 30.8
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 9.7e-21 105.5 319 31.3
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 2.2e-20 104.4 160 43.8
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 4.8e-20 103.2 395 29.6
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 6.3e-20 102.8 175 42.9
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 6.3e-20 102.8 179 42.5
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-19 102.1 533 29.6
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.4e-19 101.7 409 29.6
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.4e-19 101.7 519 28.9
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 1.8e-19 101.3 160 43.1
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 1.8e-19 101.3 175 42.3
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 2.4e-19 100.9 427 31.4
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 5.3e-19 99.8 563 27.2
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.2e-18 98.6 586 28.7
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.5e-18 98.2 499 29.7
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 2.0e-18 97.8 538 27.1
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 2.6e-18 97.4 505 28.3
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 4.5e-18 96.7 252 33.7
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 4.5e-18 96.7 164 42.7
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 5.9e-18 96.3 437 28.4
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 7.7e-18 95.9 522 29.3
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 1.0e-17 95.5 397 27.0
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.0e-17 95.5 532 29.7
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.3e-17 95.1 627 25.5
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 2.2e-17 94.4 529 29.5
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 2.9e-17 94.0 451 25.9
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.8e-17 93.6 503 27.8
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 5.0e-17 93.2 555 27.9
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 8.5e-17 92.4 519 26.8
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.1e-16 92.0 313 31.9
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.1e-16 92.0 125 47.2
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 1.4e-16 91.7 593 26.8
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 5.5e-16 89.7 533 27.8
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.2e-16 89.4 620 26.6
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.2e-16 89.4 622 26.5
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 9.4e-16 89.0 419 28.9
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.4e-16 89.0 425 28.9
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.6e-15 88.2 179 39.1
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 4.6e-15 86.7 515 26.8
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.6e-15 86.7 408 27.9
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 7.9e-15 85.9 129 44.2
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 1.4e-14 85.1 315 29.8
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 1.8e-14 84.7 341 29.3
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.3e-14 84.3 527 26.8
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.1e-13 82.0 456 28.1
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 1.5e-13 81.6 170 38.8
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 2.0e-13 81.3 531 25.8
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.0e-13 81.3 214 34.6
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.3e-13 80.5 262 28.6
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 3.3e-13 80.5 321 27.4
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 4.3e-13 80.1 257 30.7
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 4.3e-13 80.1 552 26.3
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 5.7e-13 79.7 439 29.4
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 5.7e-13 79.7 501 27.3
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 9.7e-13 79.0 284 29.9
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.7e-12 78.2 550 27.3
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 2.2e-12 77.8 449 27.2
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 2.2e-12 77.8 180 40.0
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 2.2e-12 77.8 264 30.3
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 2.8e-12 77.4 142 39.4
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 2.8e-12 77.4 146 39.0
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 3.7e-12 77.0 469 28.8
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 4.8e-12 76.6 490 28.4
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 4.8e-12 76.6 313 29.7
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 4.8e-12 76.6 249 30.9
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 6.3e-12 76.3 132 42.4
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 1.4e-11 75.1 142 39.4
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.4e-11 74.3 602 25.1
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.5e-10 71.6 381 27.6
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 4.5e-10 70.1 262 29.4
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.7e-10 69.3 410 26.8
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.0e-09 68.9 175 32.0
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.3e-09 68.6 434 26.0
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.3e-09 68.6 285 29.8
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 1.7e-09 68.2 170 34.7
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 1.7e-09 68.2 170 37.6
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 3.8e-09 67.0 263 31.9
MBI18_g09027_MAGBIO Magnolia biondii HOM05D001888 ORTHO05D001842 8.5e-09 65.9 314 31.2
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.4e-08 65.1 179 33.5
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.9e-08 64.7 579 26.4
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 2.5e-08 64.3 123 43.1
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 3.2e-08 63.9 125 36.8
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 3.2e-08 63.9 198 29.3
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 4.2e-08 63.5 202 32.2
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 5.5e-08 63.2 83 47.0
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 2.7e-07 60.8 546 24.5
MBI17_g21975_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 2.7e-07 60.8 240 26.7
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 6.1e-07 59.7 66 51.5
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 6.1e-07 59.7 97 41.2
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 6.1e-07 59.7 97 41.2
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 6.1e-07 59.7 118 38.1
CAN.G166.11 Capsicum annuum HOM05D004189 ORTHO05D004092 7.9e-07 59.3 121 33.9
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 1.0e-06 58.9 115 37.4
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.4e-06 58.5 283 27.9
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.4e-06 58.5 238 28.2
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.4e-06 58.5 222 32.0
Sopen01g005170 Solanum pennellii HOM05D000155 ORTHO05D000022 1.8e-06 58.2 99 36.4
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 3.0e-06 57.4 466 26.4
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 3.9e-06 57.0 460 25.4


User provided reference genes

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