Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 0.0e+00 9462.0 4837 100.0
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 0.0e+00 8665.1 4833 92.4
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 0.0e+00 8342.3 4901 87.3
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 0.0e+00 8195.9 4728 87.9
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 0.0e+00 7661.6 4838 80.7
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 0.0e+00 7556.1 4836 79.5
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 7525.2 4846 79.2
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 7517.2 4840 78.8
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 0.0e+00 7493.3 4835 78.9
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 7487.1 4847 79.0
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 0.0e+00 7436.3 4825 78.7
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 0.0e+00 7396.2 4832 77.9
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 0.0e+00 7388.1 4863 77.9
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 0.0e+00 7333.0 4842 78.0
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 0.0e+00 7326.1 4832 77.0
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 0.0e+00 7321.5 4852 77.0
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 0.0e+00 7304.5 4826 77.0
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 7270.6 4830 77.3
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 7256.8 4832 76.6
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 7242.9 4829 76.7
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 7242.5 4829 76.7
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 7162.4 4841 75.7
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 7160.1 4823 75.8
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 7101.9 4848 75.3
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 7093.4 4826 75.5
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 7085.0 4842 74.8
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 0.0e+00 7076.1 4840 74.7
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 7069.6 4844 74.8
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 7069.6 4844 74.8
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 0.0e+00 7065.3 4904 73.8
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 7064.5 4730 76.1
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 0.0e+00 7053.8 4862 74.0
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 0.0e+00 7048.0 4895 74.0
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 0.0e+00 7044.9 4825 74.8
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 7044.9 4840 74.5
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 7044.1 4837 74.5
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 7034.9 4828 75.3
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 0.0e+00 7025.6 4850 74.1
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 0.0e+00 7016.0 4822 74.6
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 0.0e+00 6961.7 4859 73.3
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 0.0e+00 6954.8 4832 73.1
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 0.0e+00 6893.1 4840 72.8
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 6871.9 4837 73.2
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 0.0e+00 6869.6 4840 72.9
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 6854.2 4840 73.0
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 6834.6 4825 73.3
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 0.0e+00 6724.4 4844 71.3
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 6685.1 4836 70.7
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 6683.6 4836 70.7
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 0.0e+00 6666.6 4857 70.7
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 0.0e+00 6663.9 4839 71.0
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 0.0e+00 6661.2 4844 71.0
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 0.0e+00 6655.8 4834 70.6
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 0.0e+00 6647.0 4823 71.0
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 0.0e+00 6640.8 4834 70.6
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 0.0e+00 6615.4 4821 70.6
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 6591.5 4871 70.0
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 6586.5 4830 70.3
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 6534.1 4841 69.7
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 6506.0 4862 69.2
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 0.0e+00 6486.7 4863 69.8
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 6459.0 4840 69.7
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 0.0e+00 6441.7 4836 68.8
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 0.0e+00 6429.7 4834 68.9
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 0.0e+00 6427.8 4827 68.8
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 0.0e+00 6415.5 4840 68.4
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 0.0e+00 6410.5 4831 68.5
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 0.0e+00 6408.9 4822 68.4
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 0.0e+00 6408.2 4825 68.4
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 0.0e+00 6407.4 4821 68.7
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 0.0e+00 6388.9 4842 68.5
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 0.0e+00 6374.7 4833 68.7
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 6361.6 4833 67.9
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 0.0e+00 6348.1 4834 67.7
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 0.0e+00 6345.4 4867 69.6
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 0.0e+00 6327.7 4848 67.6
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 0.0e+00 6319.6 4859 67.2
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 0.0e+00 6313.8 3877 83.4
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 0.0e+00 6307.2 4648 69.8
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 5864.3 4844 63.4
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 5766.8 4844 62.6
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 0.0e+00 5657.4 4788 61.4
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 0.0e+00 5469.0 4775 60.0
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 0.0e+00 5430.9 4869 59.2
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 5326.1 3719 74.5
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 4912.8 2938 84.6
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 0.0e+00 4872.0 3848 65.2
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 0.0e+00 4555.4 4984 51.4
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 4405.9 4487 54.5
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 4350.0 4973 50.3
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 4233.7 4968 48.9
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 4142.8 4572 51.5
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 3914.4 3354 61.3
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3902.8 2272 86.4
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 3894.4 2369 83.5
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3884.7 2272 86.1
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3784.2 2969 66.3
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 0.0e+00 3739.9 2360 80.1
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 3627.0 2750 67.6
Glyma.08G252650 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 3438.3 2028 86.0
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 3323.5 2244 76.9
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 3164.8 2868 58.3
vmacro05611 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 3115.1 2403 66.5
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 3064.6 2580 63.7
Cpa.g.sc14.238 Carica papaya HOM05D003926 ORTHO05D005273 0.0e+00 3038.8 1752 87.4
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 0.0e+00 3026.1 5722 36.7
SHI25822 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 2877.8 2202 67.8
BcaC05g30340 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 2853.2 1770 81.2
HPP92_020589 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 2769.2 1885 74.7
A05p45140 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2726.0 1661 82.1
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 2673.3 2708 54.8
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 2605.1 2419 57.1
arahy.Tifrunner.gnm1.ann1.DT5ZWB Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 2441.4 2078 62.2
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 0.0e+00 2406.7 1507 80.2
Gohir.A07G178901 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 2262.3 1918 61.9
SHI25820 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 2179.4 2402 50.5
HPP92_020588 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 1895.9 2366 45.9
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 0.0e+00 1688.7 2879 39.2
FAN09G1503 Fragaria x ananassa HOM05D003926 ORTHO05D005273 0.0e+00 1681.8 1424 60.6
Rhsim05G0129500 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 1532.7 1728 51.9
Atru.chr12.1304 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 1243.4 718 88.3
Psat4g186360 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 1197.2 876 71.0
CDE01G0480 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 1184.1 774 78.8
SMO361G0392 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1087.0 1058 57.8
SMO199G0087 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 9.5e-309 1065.8 1061 56.8
Psat4g179640 Pisum sativum HOM05D003926 ORTHO05D005273 8.2e-252 876.7 651 69.7
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 1.3e-217 763.1 535 75.3
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 5.2e-214 751.1 4235 24.0
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 4.9e-212 744.6 842 53.4
Peaxi162Scf00020g02344 Petunia axillaris HOM05D003926 ORTHO05D005273 1.7e-201 709.5 956 42.5
Migut.H00583 Erythranthe guttata HOM05D003926 ORTHO05D005273 1.2e-178 633.6 386 81.6
vmacro11260 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 1.3e-172 613.6 389 79.2
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 1.8e-129 470.3 830 40.0
Actinidia36271 Actinidia chinensis HOM05D003926 ORTHO05D005273 4.5e-117 429.1 261 84.3
Psat7g201760 Pisum sativum HOM05D003926 ORTHO05D005273 3.8e-100 372.9 267 72.3
Psat1g100800 Pisum sativum HOM05D003926 ORTHO05D005273 1.6e-77 297.7 220 69.1
Psat7g201680 Pisum sativum HOM05D003926 ORTHO05D005273 4.4e-72 279.6 267 58.4
CSS0003920 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 6.6e-68 265.8 192 70.3
CSS0007096 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 8.9e-65 255.4 189 69.8
CSS0037899 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.2e-64 255.0 192 68.8
CSS0009757 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.5e-64 254.6 189 68.3
CDE01G0511 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 1.5e-64 254.6 415 36.1
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 8.4e-63 248.8 182 70.3
CSS0026086 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 4.4e-56 226.5 194 64.4
A05p29520 Brassica napus HOM05D003926 ORTHO05D005273 4.2e-54 219.9 619 29.6
Oeu047260.2 Olea europaea HOM05D003926 ORTHO05D005273 2.7e-53 217.2 147 78.2
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 5.6e-51 209.5 133 76.7
Psat2g086480 Pisum sativum HOM05D003926 ORTHO05D005273 1.3e-44 188.3 114 80.7
Rhsim10G0100000 Rhododendron simsii HOM05D003926 ORTHO05D005273 1.1e-43 185.3 331 41.7
Psat4g170760 Pisum sativum HOM05D003926 ORTHO05D005273 2.4e-41 177.6 108 81.5
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 2.5e-35 157.5 134 64.2
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 8.4e-31 142.5 187 46.5
QL10p058201 Quercus lobata HOM05D001813 ORTHO05D008124 8.4e-31 142.5 151 59.6
A05p29570 Brassica napus HOM05D003926 ORTHO05D010327 1.8e-28 134.8 275 34.2
VMungo1383G2275 Vigna mungo HOM05D003926 ORTHO05D005273 6.7e-28 132.9 109 66.1
ATR0620G072 Amborella trichopoda HOM05D003059 ORTHO05D003414 1.4e-25 125.2 106 67.0
CAN.G8.6 Capsicum annuum HOM05D003926 ORTHO05D010611 1.0e-23 119.0 198 39.4
Actinidia36270 Actinidia chinensis HOM05D003926 ORTHO05D038129 3.6e-21 110.5 281 32.4
ATR0332G115 Amborella trichopoda HOM05D003926 ORTHO05D005273 3.6e-21 110.5 105 61.9
arahy.Tifrunner.gnm1.ann1.8KUK4W Arachis hypogaea HOM05D003926 ORTHO05D005273 8.8e-20 105.9 255 32.5
BcaC05g29898 Brassica carinata HOM05D003926 ORTHO05D005273 4.3e-19 103.6 120 52.5
Eucgr.I02066 Eucalyptus grandis HOM05D003926 ORTHO05D018213 2.8e-18 100.9 118 50.0
Sp7g04320 Schrenkiella parvula HOM05D003926 ORTHO05D005273 3.1e-17 97.4 78 60.3
Hma1.2p1_0587F.1_g184120 Hydrangea macrophylla HOM05D003926 ORTHO05D005273 1.2e-16 95.5 53 79.2
Cpa.g.sc3603.1 Carica papaya HOM05D003926 ORTHO05D018213 2.6e-16 94.4 117 48.7
Psat4g018040 Pisum sativum HOM05D003926 ORTHO05D005273 6.5e-15 89.7 79 55.7
Psat7g160960 Pisum sativum HOM05D001399 ORTHO05D002785 9.4e-14 85.9 69 59.4
Dinv36991 Davidia involucrata HOM05D003926 ORTHO05D038129 1.2e-13 85.5 56 76.8
GSVIVG01005908001 Vitis vinifera HOM05D003926 ORTHO05D005273 1.6e-13 85.1 58 74.1
ATR0564G481 Amborella trichopoda HOM05D000537 ORTHO05D000415 4.7e-13 83.6 63 60.3
Psat3g160120 Pisum sativum HOM05D003926 ORTHO05D005273 6.1e-13 83.2 69 56.5
Psat3g105800 Pisum sativum HOM05D000129 ORTHO05D007829 3.9e-12 80.5 99 46.5
ATR0585G095 Amborella trichopoda HOM05D003926 ORTHO05D005273 5.1e-12 80.1 53 67.9
COL.COLO4_10661 Corchorus olitorius HOM05D003926 ORTHO05D018213 6.7e-12 79.7 107 41.1
Psat3g091240 Pisum sativum HOM05D000942 ORTHO05D000918 5.7e-11 76.6 75 57.3
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 5.3e-09 70.1 36 83.3
Psat7g240480 Pisum sativum HOM05D000029 ORTHO05D037355 9.1e-09 69.3 47 70.2
CDE01G0142 Ceratophyllum demersum HOM05D003926 ORTHO05D018213 4.5e-08 67.0 119 37.0
Nn1g06304 Nelumbo nucifera HOM05D003926 ORTHO05D018213 2.2e-07 64.7 102 39.2
Pp3c22_5030 Physcomitrium patens HOM05D000005 ORTHO05D000239 1.9e-06 61.6 93 35.5
Actinidia14026 Actinidia chinensis HOM05D003926 ORTHO05D018213 2.5e-06 61.2 100 39.0


User provided reference genes

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