Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 1.7e-182 642.5 320 100.0
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 5.4e-152 541.2 360 81.1
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 4.6e-95 352.1 334 61.4
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.8e-67 260.4 344 48.5
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 1.8e-59 233.8 346 45.4
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 4.1e-59 232.6 340 45.9
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.0e-58 230.3 344 42.4
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.5e-58 229.6 344 45.3
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 7.2e-56 221.9 331 44.1
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 2.8e-55 219.9 219 56.6
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 2.3e-54 216.9 333 42.6
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 4.0e-54 216.1 218 56.0
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 8.8e-54 214.9 277 45.5
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 8.3e-52 208.4 336 43.5
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 4.1e-51 206.1 333 40.8
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 9.2e-51 204.9 318 43.1
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 1.3e-49 201.1 341 39.6
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 2.5e-48 196.8 328 43.9
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 5.6e-48 195.7 325 41.8
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 9.5e-48 194.9 325 41.5
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 8.0e-47 191.8 332 41.0
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.5e-45 187.6 307 43.6
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 5.7e-45 185.7 237 48.9
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 5.7e-45 185.7 319 41.7
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 9.8e-45 184.9 255 46.3
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 1.3e-44 184.5 305 44.3
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.8e-43 180.6 322 42.5
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 1.2e-42 177.9 298 41.9
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 5.0e-41 172.6 179 54.2
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 6.6e-41 172.2 307 40.4
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 1.1e-40 171.4 340 39.1
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 1.5e-40 171.0 197 51.3
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 5.6e-40 169.1 347 38.6
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 9.5e-40 168.3 223 45.3
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 2.1e-39 167.2 190 51.1
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 2.8e-39 166.8 221 49.3
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 8.0e-39 165.2 333 35.7
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.1e-38 164.9 334 40.1
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 1.8e-38 164.1 297 40.1
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 2.3e-38 163.7 178 53.4
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 2.6e-37 160.2 222 47.3
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 9.2e-35 151.8 358 33.8
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 4.6e-34 149.4 340 36.5
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.1e-32 144.8 164 55.5
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 2.5e-32 143.7 259 42.1
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 4.3e-32 142.9 354 35.0
Prupe.6G075200 Prunus persica HOM05D005220 ORTHO05D006082 1.2e-31 141.4 183 47.0
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 1.1e-30 138.3 225 41.3
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 1.8e-30 137.5 168 53.6
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 2.3e-30 137.1 159 54.1
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 4.0e-30 136.3 147 52.4
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 4.0e-30 136.3 165 48.5
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 1.2e-29 134.8 144 52.1
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 3.4e-29 133.3 185 44.3
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 5.8e-29 132.5 159 52.8
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 5.8e-29 132.5 166 51.8
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 1.3e-28 131.3 154 52.6
MD00G1013500 Malus domestica HOM05D005220 ORTHO05D006082 2.2e-28 130.6 178 44.9
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 2.9e-28 130.2 132 56.1
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 3.7e-28 129.8 158 50.0
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 4.9e-28 129.4 187 44.4
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 6.4e-28 129.0 167 46.7
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 1.4e-27 127.9 151 49.7
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 1.4e-27 127.9 314 34.7
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 1.4e-27 127.9 132 53.8
MD03G1090800 Malus domestica HOM05D005220 ORTHO05D006082 1.9e-27 127.5 183 43.2
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.9e-27 127.5 129 54.3
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 4.1e-27 126.3 308 36.7
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 7.1e-27 125.6 150 51.3
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 9.2e-27 125.2 252 37.7
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 9.2e-27 125.2 151 47.7
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 9.2e-27 125.2 133 51.9
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 1.2e-26 124.8 151 49.0
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 2.7e-26 123.6 133 51.9
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 3.5e-26 123.2 207 40.1
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 4.6e-26 122.9 194 43.8
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 6.0e-26 122.5 190 41.6
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 7.8e-26 122.1 158 46.2
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 1.0e-25 121.7 145 47.6
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 1.3e-25 121.3 194 43.3
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 2.3e-25 120.6 140 48.6
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 8.6e-25 118.6 183 41.5
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.1e-24 118.2 152 47.4
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 1.5e-24 117.9 187 40.6
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 2.5e-24 117.1 205 40.0
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 7.3e-24 115.5 162 45.7
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 9.5e-24 115.2 162 45.7
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 2.8e-23 113.6 147 46.9
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 8.1e-23 112.1 160 45.0
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 1.4e-22 111.3 166 41.0
RcHm_v2.0_Chr5g0065291 Rosa chinensis HOM05D005220 ORTHO05D006082 1.4e-22 111.3 180 38.9
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 2.4e-22 110.5 152 46.1
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 3.1e-22 110.2 166 41.6
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 5.2e-22 109.4 126 47.6
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 1.2e-21 108.2 149 47.0
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 1.2e-21 108.2 143 46.2
Sopen02g016260 Solanum pennellii HOM05D005220 ORTHO05D006082 1.2e-21 108.2 207 37.7
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 2.0e-21 107.5 140 47.1
Solyc02g067070.4 Solanum lycopersicum HOM05D005220 ORTHO05D006082 2.0e-21 107.5 207 37.2
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 7.6e-21 105.5 125 48.0
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.7e-20 104.4 139 46.8
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 2.9e-20 103.6 159 45.3
Os10g0324600 Oryza sativa ssp. japonica HOM05D005220 ORTHO05D006082 2.9e-20 103.6 263 33.1
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 6.4e-20 102.4 159 45.3
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 3.2e-19 100.1 328 27.4
Aa31LG2G3950 Aethionema arabicum HOM05D005220 ORTHO05D006082 5.4e-19 99.4 192 37.5
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 7.1e-19 99.0 175 37.7
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 7.1e-19 99.0 131 45.0
FAN21G2192 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.2e-18 98.2 181 37.0
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 1.6e-18 97.8 171 36.3
FAN25G3767 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.6e-18 97.8 181 35.9
CAN.G979.11 Capsicum annuum HOM05D005220 ORTHO05D006082 2.1e-18 97.4 190 37.4
FvH4_3g36400 Fragaria vesca HOM05D005220 ORTHO05D006082 2.7e-18 97.1 178 37.6
FAN16G3714 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.7e-18 97.1 127 44.9
FAN11G0817 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.5e-18 96.7 177 37.3
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 1.3e-17 94.7 140 44.3
SGA_v2.0_scaffold52G19178 Striga asiatica HOM05D005220 ORTHO05D006082 1.3e-17 94.7 245 32.2
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 1.7e-17 94.4 125 40.8
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 1.1e-16 91.7 156 38.5
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 5.6e-16 89.4 124 41.9
Migut.H00644 Erythranthe guttata HOM05D005220 ORTHO05D006082 1.6e-15 87.8 67 64.2
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 2.1e-15 87.4 138 39.9
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 3.6e-15 86.7 123 41.5
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 3.6e-15 86.7 141 39.0
Actinidia20636 Actinidia chinensis HOM05D001670 ORTHO05D006082 1.4e-14 84.7 62 62.9
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 1.8e-14 84.3 123 37.4
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 1.8e-14 84.3 208 31.2
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 1.8e-14 84.3 143 36.4
Prupe.2G102500 Prunus persica HOM05D005220 ORTHO05D006082 2.4e-14 84.0 131 45.0
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.0e-13 80.9 131 38.2
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 2.2e-12 77.4 124 38.7
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 4.9e-12 76.3 173 31.8
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 1.4e-11 74.7 134 36.6
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 2.4e-11 73.9 53 64.2
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 1.2e-10 71.6 134 33.6
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 1.2e-10 71.6 134 34.3
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 1.7e-09 67.8 130 31.5
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 6.6e-09 65.9 115 36.5
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 1.1e-08 65.1 130 34.6
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 1.1e-08 65.1 130 34.6
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 1.1e-08 65.1 174 28.7
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 1.5e-08 64.7 126 33.3
Gohir.A12G180900 Gossypium hirsutum HOM05D005220 ORTHO05D006082 2.5e-08 63.9 125 29.6
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 3.3e-08 63.5 126 33.3
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 3.3e-08 63.5 167 27.5
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 4.3e-08 63.2 129 31.8
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 1.3e-07 61.6 132 30.3
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 2.1e-07 60.8 124 31.5
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 2.8e-07 60.5 178 28.1
BcaC06g33212 Brassica carinata HOM05D001456 ORTHO05D027445 3.6e-07 60.1 127 29.1
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 3.6e-07 60.1 155 25.2
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 4.8e-07 59.7 182 28.6
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 4.8e-07 59.7 181 28.7
THA.LOC104818515 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 4.8e-07 59.7 129 37.2
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 6.2e-07 59.3 131 32.8
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 6.2e-07 59.3 151 26.5
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 6.2e-07 59.3 51 49.0
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 1.1e-06 58.5 192 27.1
Lsat_1_v5_gn_4_109841 Lactuca sativa HOM05D005220 ORTHO05D006082 1.1e-06 58.5 171 31.0
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 1.1e-06 58.5 189 25.9
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 1.4e-06 58.2 175 28.0
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 1.8e-06 57.8 187 24.1
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 2.4e-06 57.4 128 28.1
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 2.4e-06 57.4 190 32.1
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 3.1e-06 57.0 171 24.6
C04p53570 Brassica napus HOM05D012895 ORTHO05D014428 4.0e-06 56.6 129 30.2
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 5.3e-06 56.2 191 25.1
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 5.3e-06 56.2 166 27.1
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 5.3e-06 56.2 190 30.0
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 5.3e-06 56.2 187 25.1
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 5.3e-06 56.2 198 25.8
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 9.0e-06 55.5 152 29.6
BcaC02g08512 Brassica carinata HOM05D012895 ORTHO05D014428 9.0e-06 55.5 129 30.2
BolC4t26912H Brassica oleracea HOM05D012895 ORTHO05D014428 9.0e-06 55.5 129 30.2
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 9.0e-06 55.5 180 27.2
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 9.0e-06 55.5 149 28.2


User provided reference genes

Program Settings