Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007387 Carpinus fangiana HOM05D000043 ORTHO05D034067 8.7e-49 196.8 111 100.0
Cfa012464 Carpinus fangiana HOM05D000043 ORTHO05D034067 9.9e-37 156.8 99 91.9
Haze_20008 Corylus avellana HOM05D000043 ORTHO05D000600 9.9e-29 130.2 89 87.6
Cfa020152 Carpinus fangiana HOM05D000043 ORTHO05D000600 4.9e-28 127.9 70 97.1
CiPaw.10G025700 Carya illinoinensis HOM05D000043 ORTHO05D000600 8.7e-25 117.1 87 71.3
CiPaw.09G029300 Carya illinoinensis HOM05D000043 ORTHO05D000600 5.3e-22 107.8 89 62.9
Hma1.2p1_0431F.1_g151530 Hydrangea macrophylla HOM05D000043 ORTHO05D000600 5.3e-22 107.8 92 66.3
Dinv24060 Davidia involucrata HOM05D000043 ORTHO05D000600 4.9e-20 101.3 71 67.6
TAR633G2088 Trochodendron aralioides HOM05D000043 ORTHO05D000600 1.4e-19 99.8 101 59.4
RcHm_v2.0_Chr3g0479331 Rosa chinensis HOM05D000043 ORTHO05D000600 1.9e-19 99.4 90 61.1
QL07p024217 Quercus lobata HOM05D000043 ORTHO05D000600 3.2e-19 98.6 88 64.8
VMungo1383G1720 Vigna mungo HOM05D000043 ORTHO05D000600 5.5e-19 97.8 71 70.4
FAN02G0957 Fragaria x ananassa HOM05D000043 ORTHO05D000600 9.3e-19 97.1 71 69.0
FAN05G3512 Fragaria x ananassa HOM05D000043 ORTHO05D000600 9.3e-19 97.1 71 69.0
FAN09G3110 Fragaria x ananassa HOM05D000043 ORTHO05D000600 9.3e-19 97.1 71 69.0
MD12G1055700 Malus domestica HOM05D000043 ORTHO05D000600 9.3e-19 97.1 73 71.2
Prupe.7G079400 Prunus persica HOM05D000043 ORTHO05D000600 9.3e-19 97.1 73 71.2
Manes.08G044000 Manihot esculenta HOM05D000043 ORTHO05D000600 1.2e-18 96.7 90 63.3
Phvul.001G143600 Phaseolus vulgaris HOM05D000043 ORTHO05D000600 1.2e-18 96.7 71 69.0
FvH4_6g22040 Fragaria vesca HOM05D000043 ORTHO05D000600 2.1e-18 95.9 71 67.6
FAN14G1102 Fragaria x ananassa HOM05D000043 ORTHO05D000600 2.1e-18 95.9 71 67.6
Potri.006G193900 Populus trichocarpa HOM05D000043 ORTHO05D000600 2.1e-18 95.9 92 60.9
Manes.09G036800 Manihot esculenta HOM05D000043 ORTHO05D000600 3.5e-18 95.1 85 60.0
Cc06_g15730 Coffea canephora HOM05D000043 ORTHO05D000600 6.0e-18 94.4 96 51.0
CsaV3_3G038690 Cucumis sativus L. HOM05D000043 ORTHO05D000600 1.3e-17 93.2 70 62.9
MSTRG.10849 Avicennia marina HOM05D000043 ORTHO05D000600 3.0e-17 92.0 88 56.8
SalBow6G0255 Salvia bowleyana HOM05D000043 ORTHO05D000600 8.7e-17 90.5 91 54.9
ClCG10G017630 Citrullus lanatus HOM05D000043 ORTHO05D000600 1.1e-16 90.1 70 62.9
MELO3C009613.2 Cucumis melo HOM05D000043 ORTHO05D000600 1.5e-16 89.7 71 63.4
Lj1g0013039 Lotus japonicus HOM05D000043 ORTHO05D000600 1.9e-16 89.4 69 62.3
Sabra16G0062100 Salix brachista HOM05D000043 ORTHO05D000600 1.9e-16 89.4 74 66.2
Glyma.19G149100 Glycine max HOM05D000043 ORTHO05D000600 4.3e-16 88.2 89 55.1
TAR369G0126 Trochodendron aralioides HOM05D000043 ORTHO05D000600 4.3e-16 88.2 90 67.8
Atru.chr8.1146 Acer truncatum HOM05D000043 ORTHO05D000600 1.3e-15 86.7 68 66.2
Solyc10g080550.2 Solanum lycopersicum HOM05D000043 ORTHO05D000600 1.3e-15 86.7 108 47.2
Potri.016G059300 Populus trichocarpa HOM05D000043 ORTHO05D000600 1.6e-15 86.3 74 64.9
TWI53G0430 Tripterygium wilfordii HOM05D000043 ORTHO05D000600 2.2e-15 85.9 90 54.4
Thecc.05G174000 Theobroma cacao HOM05D000043 ORTHO05D000600 3.7e-15 85.1 72 63.9
Migut.J01848 Erythranthe guttata HOM05D000043 ORTHO05D000600 4.8e-15 84.7 89 53.9
CARHR206500 Cardamine hirsuta HOM05D000043 ORTHO05D000600 8.2e-15 84.0 91 50.5
Dinv14318 Davidia involucrata HOM05D000043 ORTHO05D000600 8.2e-15 84.0 69 63.8
Peaxi162Scf00480g00059 Petunia axillaris HOM05D000043 ORTHO05D000600 8.2e-15 84.0 90 53.3
Duzib093G1334 Durio zibethinus HOM05D000043 ORTHO05D000600 1.1e-14 83.6 90 57.8
Nitab4.5_0001440g0080 Nicotiana tabacum HOM05D000043 ORTHO05D000600 1.8e-14 82.8 90 47.8
Duzib106G1776 Durio zibethinus HOM05D000043 ORTHO05D000600 2.4e-14 82.4 90 57.8
Nitab4.5_0000105g0190 Nicotiana tabacum HOM05D000043 ORTHO05D000600 2.4e-14 82.4 100 51.0
PGSC0003DMG400011446 Solanum tuberosum HOM05D000043 ORTHO05D000600 2.4e-14 82.4 72 62.5
Nitab4.5_0002343g0030 Nicotiana tabacum HOM05D000043 ORTHO05D000600 3.1e-14 82.0 97 51.5
PGSC0003DMG400023668 Solanum tuberosum HOM05D000043 ORTHO05D000600 4.1e-14 81.6 107 44.9
Solyc10g078910.3 Solanum lycopersicum HOM05D000043 ORTHO05D000600 5.3e-14 81.3 72 61.1
Sopen10g031090 Solanum pennellii HOM05D000043 ORTHO05D000600 5.3e-14 81.3 108 45.4
Rhsim03G0005100 Rhododendron simsii HOM05D000043 ORTHO05D000600 6.9e-14 80.9 67 61.2
DCAR_017035 Daucus carota HOM05D000043 ORTHO05D000600 9.0e-14 80.5 90 53.3
MD14G1054900 Malus domestica HOM05D000043 ORTHO05D000600 9.0e-14 80.5 72 59.7
Duzib128G0967 Durio zibethinus HOM05D000043 ORTHO05D000600 1.2e-13 80.1 90 55.6
Oeu006208.1 Olea europaea HOM05D000043 ORTHO05D000600 1.2e-13 80.1 96 52.1
TWI77G0891 Tripterygium wilfordii HOM05D000043 ORTHO05D000600 1.2e-13 80.1 63 63.5
Nitab4.5_0001079g0070 Nicotiana tabacum HOM05D000043 ORTHO05D000600 1.5e-13 79.7 90 46.7
PSO384G3361 Papaver somniferum HOM05D000043 ORTHO05D000600 1.5e-13 79.7 60 68.3
Sopen10g029530 Solanum pennellii HOM05D000043 ORTHO05D000600 1.5e-13 79.7 72 59.7
Glyma.03G145900 Glycine max HOM05D000043 ORTHO05D000600 2.0e-13 79.3 89 52.8
AT5G06700 Arabidopsis thaliana HOM05D000043 ORTHO05D000600 2.6e-13 79.0 92 48.9
CANSAT64G1695 Cannabis sativa HOM05D000043 ORTHO05D000600 2.6e-13 79.0 90 48.9
SalBow1G2198 Salvia bowleyana HOM05D000043 ORTHO05D000600 3.4e-13 78.6 65 56.9
SalBow1G3471 Salvia bowleyana HOM05D000043 ORTHO05D000600 3.4e-13 78.6 65 56.9
TPR.G30309 Trifolium pratense HOM05D000043 ORTHO05D000600 3.4e-13 78.6 89 52.8
Glyma.09G109600 Glycine max HOM05D000043 ORTHO05D000600 4.5e-13 78.2 70 58.6
Aqoxy1G00132 Aquilegia oxysepala HOM05D000043 ORTHO05D000600 5.9e-13 77.8 92 60.9
MSTRG.6489 Avicennia marina HOM05D000043 ORTHO05D000600 5.9e-13 77.8 99 46.5
Cpa.g.sc85.58 Carica papaya HOM05D000043 ORTHO05D034067 5.9e-13 77.8 73 57.5
Nn2g15710 Nelumbo nucifera HOM05D000043 ORTHO05D000600 5.9e-13 77.8 89 57.3
PSO339G0282 Papaver somniferum HOM05D000043 ORTHO05D000600 5.9e-13 77.8 60 68.3
arahy.Tifrunner.gnm1.ann1.2WDS0D Arachis hypogaea HOM05D000043 ORTHO05D000600 7.6e-13 77.4 94 50.0
arahy.Tifrunner.gnm1.ann1.47YT22 Arachis hypogaea HOM05D000043 ORTHO05D000600 7.6e-13 77.4 94 50.0
Thhalv10012993m.g Eutrema salsugineum HOM05D000043 ORTHO05D000600 1.0e-12 77.0 93 48.4
Lalb_Chr15g0079041 Lupinus albus HOM05D000043 ORTHO05D000600 1.0e-12 77.0 91 50.5
PGR004G2511 Punica granatum HOM05D000043 ORTHO05D000600 1.0e-12 77.0 90 50.0
Sp6g36160 Schrenkiella parvula HOM05D000043 ORTHO05D000600 1.0e-12 77.0 93 46.2
VMungo0720G2403 Vigna mungo HOM05D000043 ORTHO05D000600 1.0e-12 77.0 70 58.6
Ca_12049_v3 Cicer arietinum L. HOM05D000043 ORTHO05D000600 1.3e-12 76.6 90 50.0
Phvul.007G261000 Phaseolus vulgaris HOM05D000043 ORTHO05D000600 1.3e-12 76.6 70 61.4
SGA_v2.0_scaffold69G23057 Striga asiatica HOM05D000043 ORTHO05D000600 1.3e-12 76.6 88 46.6
Atru.chr8.1145 Acer truncatum HOM05D000043 ORTHO05D000600 1.7e-12 76.3 59 66.1
Gohir.A04G057500 Gossypium hirsutum HOM05D000043 ORTHO05D000600 1.7e-12 76.3 74 58.1
Gohir.D04G089700 Gossypium hirsutum HOM05D000043 ORTHO05D000600 1.7e-12 76.3 74 58.1
TWI74G0898 Tripterygium wilfordii HOM05D000043 ORTHO05D000600 2.2e-12 75.9 69 59.4
Lalb_Chr18g0047971 Lupinus albus HOM05D000043 ORTHO05D000600 2.9e-12 75.5 89 51.7
Sed0004395 Sechium edule HOM05D000043 ORTHO05D000600 2.9e-12 75.5 57 61.4
Aa31sc40G50 Aethionema arabicum HOM05D000043 ORTHO05D000600 3.8e-12 75.1 92 45.7
Carub.0006s0558 Capsella rubella HOM05D000043 ORTHO05D000600 3.8e-12 75.1 72 54.2
TAR623G1596 Trochodendron aralioides HOM05D000043 ORTHO05D000600 3.8e-12 75.1 101 55.4
AL6G16790 Arabidopsis lyrata HOM05D000043 ORTHO05D000600 5.0e-12 74.7 93 47.3
Gohir.A01G190700 Gossypium hirsutum HOM05D000043 ORTHO05D000600 8.5e-12 73.9 72 58.3
Gohir.D01G179000 Gossypium hirsutum HOM05D000043 ORTHO05D000600 8.5e-12 73.9 72 58.3
BcaC06g32552 Brassica carinata HOM05D000043 ORTHO05D000600 1.4e-11 73.2 94 46.8
DCAR_013657 Daucus carota HOM05D000043 ORTHO05D000600 1.4e-11 73.2 67 55.2
Gorai.012G100000 Gossypium raimondii HOM05D000043 ORTHO05D000600 1.4e-11 73.2 74 56.8
Gorai.002G223800 Gossypium raimondii HOM05D000043 ORTHO05D000600 1.9e-11 72.8 72 56.9
Actinidia17281 Actinidia chinensis HOM05D000043 ORTHO05D000600 2.5e-11 72.4 97 46.4
Ca_08531_v3 Cicer arietinum L. HOM05D000043 ORTHO05D000600 2.5e-11 72.4 74 56.8
Nn7g35990 Nelumbo nucifera HOM05D000043 ORTHO05D000600 3.2e-11 72.0 70 61.4
SGA_v2.0_scaffold105G30496 Striga asiatica HOM05D000043 ORTHO05D000600 3.2e-11 72.0 98 45.9
THA.LOC104826773 Tarenaya hassleriana HOM05D000043 ORTHO05D000600 4.2e-11 71.6 96 46.9
Glyma.02G171200 Glycine max HOM05D000043 ORTHO05D000600 5.5e-11 71.2 73 53.4
HanXRQChr10g0289911 Helianthus annuus HOM05D000043 ORTHO05D000600 5.5e-11 71.2 71 54.9
Medtr0136s0010 Medicago truncatula HOM05D000043 ORTHO05D000600 7.2e-11 70.9 71 53.5
BcaB01g05998 Brassica carinata HOM05D000043 ORTHO05D000600 9.4e-11 70.5 75 48.0
C03p03230 Brassica napus HOM05D000043 ORTHO05D000600 9.4e-11 70.5 73 49.3
BolC3t12867H Brassica oleracea HOM05D000043 ORTHO05D000600 9.4e-11 70.5 73 49.3
BraA10t45010Z Brassica rapa HOM05D000043 ORTHO05D000600 9.4e-11 70.5 93 46.2
MBI13_g20489_MAGBIO Magnolia biondii HOM05D000043 ORTHO05D000600 1.2e-10 70.1 89 44.9
A03p02830 Brassica napus HOM05D000043 ORTHO05D000600 1.6e-10 69.7 71 49.3
BraA03t09646Z Brassica rapa HOM05D000043 ORTHO05D000600 1.6e-10 69.7 71 49.3
C09p70060 Brassica napus HOM05D000043 ORTHO05D000600 2.1e-10 69.3 96 44.8
Hund24797 Selenicereus undatus HOM05D000043 ORTHO05D000600 2.1e-10 69.3 93 46.2
A10p29690 Brassica napus HOM05D000043 ORTHO05D000600 2.7e-10 68.9 93 45.2
BolC9t59749H Brassica oleracea HOM05D000043 ORTHO05D000600 2.7e-10 68.9 95 45.3
CSS0005605 Camellia sinensis var. sinensis HOM05D000043 ORTHO05D000600 2.7e-10 68.9 55 63.6
BcaC06g32386 Brassica carinata HOM05D000043 ORTHO05D000600 3.6e-10 68.6 96 44.8
MBI19_g23206_MAGBIO Magnolia biondii HOM05D000043 ORTHO05D000600 6.1e-10 67.8 109 48.6
Lj2C365T3 Lonicera japonica HOM05D000043 ORTHO05D000600 7.9e-10 67.4 60 61.7
Rhsim04G0096000 Rhododendron simsii HOM05D000043 ORTHO05D000600 7.9e-10 67.4 71 52.1
THA.LOC104799290 Tarenaya hassleriana HOM05D000043 ORTHO05D000600 1.8e-09 66.2 105 46.7
Ciclev10011263m.g Citrus clementina HOM05D000043 ORTHO05D000600 3.0e-09 65.5 70 55.7
Aa31sc40G60 Aethionema arabicum HOM05D000043 ORTHO05D000600 2.5e-08 62.4 71 47.9
Peaxi162Scf00003g04538 Petunia axillaris HOM05D000043 ORTHO05D000600 2.5e-08 62.4 87 47.1
Sed0027698 Sechium edule HOM05D000043 ORTHO05D000600 2.5e-08 62.4 69 50.7
Eucgr.A02463 Eucalyptus grandis HOM05D000043 ORTHO05D000600 4.3e-08 61.6 76 52.6
SHI15920 Sapria himalayana HOM05D000043 ORTHO05D000600 5.7e-08 61.2 104 39.4
CARHR086630 Cardamine hirsuta HOM05D000043 ORTHO05D000600 2.2e-07 59.3 60 51.7
EL10Ac3g06894 Beta vulgaris HOM05D000043 ORTHO05D000600 4.8e-07 58.2 70 45.7
BraA01t04143Z Brassica rapa HOM05D000043 ORTHO05D000600 4.8e-07 58.2 64 50.0
TPR.G18217 Trifolium pratense HOM05D000043 ORTHO05D000600 6.3e-07 57.8 61 49.2
Psat3g067800 Pisum sativum HOM05D000043 ORTHO05D000600 8.2e-07 57.4 81 44.4
BraA02t04890Z Brassica rapa HOM05D000043 ORTHO05D000600 1.4e-06 56.6 95 40.0
BolC1t05269H Brassica oleracea HOM05D000043 ORTHO05D000600 6.9e-06 54.3 65 49.2
Medtr7g093450 Medicago truncatula HOM05D000043 ORTHO05D000600 6.9e-06 54.3 79 40.5
Lju124C24G6 Lonicera japonica HOM05D000043 ORTHO05D000600 9.1e-06 53.9 39 66.7


User provided reference genes

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