Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 2.9e-210 734.9 366 100.0
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 4.1e-204 714.5 364 97.0
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 3.5e-187 658.3 364 89.6
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 1.4e-183 646.4 360 88.6
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 2.1e-176 622.5 357 84.3
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 3.1e-172 608.6 359 81.6
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 2.7e-171 605.5 366 80.6
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 3.8e-170 601.7 354 82.8
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 5.0e-170 601.3 365 79.7
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 8.6e-170 600.5 355 82.8
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 2.5e-169 599.0 356 80.9
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 2.5e-169 599.0 352 83.2
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 1.2e-168 596.7 348 82.2
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 1.6e-168 596.3 361 80.1
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 1.0e-167 593.6 357 80.7
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 1.4e-167 593.2 357 81.5
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 3.0e-167 592.0 354 81.6
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 4.0e-167 591.7 355 80.3
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 5.2e-167 591.3 357 81.2
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 5.2e-167 591.3 357 81.5
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 5.2e-167 591.3 352 81.5
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 3.4e-166 588.6 363 78.0
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 7.5e-166 587.4 359 79.7
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 1.3e-165 586.6 358 78.8
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 1.3e-165 586.6 359 79.4
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.7e-165 586.3 357 81.0
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 2.2e-165 585.9 349 81.9
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 6.4e-165 584.3 357 80.7
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 9.2e-164 580.5 346 78.9
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 1.2e-163 580.1 353 78.2
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 2.0e-163 579.3 358 77.9
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 2.7e-163 578.9 359 77.7
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.7e-163 578.9 369 78.3
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 2.7e-163 578.9 357 78.7
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 4.6e-163 578.2 348 80.2
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 4.6e-163 578.2 365 75.3
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 4.6e-163 578.2 346 80.3
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 5.9e-163 577.8 356 78.7
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 1.7e-162 576.2 350 79.7
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 2.3e-162 575.9 351 79.8
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 3.0e-162 575.5 346 80.9
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 3.9e-162 575.1 351 79.5
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 5.0e-162 574.7 355 76.9
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 6.6e-162 574.3 359 77.2
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 6.6e-162 574.3 353 77.1
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 8.6e-162 573.9 346 80.6
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.1e-161 573.5 348 79.3
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 1.1e-161 573.5 350 78.0
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 2.5e-161 572.4 358 76.5
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 5.6e-161 571.2 355 76.6
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 5.6e-161 571.2 358 76.0
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 5.6e-161 571.2 349 78.5
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 7.3e-161 570.9 353 76.8
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 7.3e-161 570.9 346 80.3
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 1.6e-160 569.7 355 76.3
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 1.6e-160 569.7 348 77.3
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 1.6e-160 569.7 356 77.5
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 1.6e-160 569.7 356 77.8
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 2.8e-160 568.9 348 78.4
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 3.6e-160 568.5 349 79.1
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 2.3e-159 565.8 358 75.4
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 6.8e-159 564.3 348 78.7
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 6.8e-159 564.3 348 77.6
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 8.9e-159 563.9 347 77.2
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 2.6e-158 562.4 350 79.4
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 2.6e-158 562.4 350 79.4
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 5.8e-158 561.2 356 75.8
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 7.5e-158 560.8 347 79.0
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 7.5e-158 560.8 350 78.0
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 3.7e-157 558.5 354 74.9
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 4.9e-157 558.1 363 74.4
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 6.4e-157 557.8 350 76.9
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 6.4e-157 557.8 339 79.1
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 6.4e-157 557.8 356 75.0
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 8.3e-157 557.4 345 78.0
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 4.1e-156 555.1 348 77.9
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 5.4e-156 554.7 349 77.7
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 5.4e-156 554.7 347 78.4
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 1.2e-155 553.5 347 76.4
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 1.6e-155 553.1 348 77.3
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 2.0e-155 552.7 349 75.9
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 4.6e-155 551.6 360 74.7
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 7.8e-155 550.8 347 76.1
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 7.8e-155 550.8 364 73.4
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 1.3e-154 550.1 336 77.1
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 2.3e-154 549.3 346 75.7
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 3.9e-154 548.5 343 77.0
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 6.6e-154 547.7 346 77.7
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 8.6e-154 547.4 356 73.6
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 1.1e-153 547.0 350 75.1
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 6.2e-152 541.2 347 76.1
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 8.1e-152 540.8 393 70.5
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 2.3e-151 539.3 351 74.4
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 1.5e-150 536.6 362 74.0
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 1.5e-150 536.6 357 74.2
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 4.4e-150 535.0 339 76.7
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 5.8e-150 534.6 350 73.4
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 7.1e-148 527.7 339 74.0
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 2.1e-147 526.2 344 74.1
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 3.5e-147 525.4 317 81.4
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 4.3e-145 518.5 384 66.9
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 1.6e-144 516.5 340 73.2
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 8.1e-144 514.2 346 72.0
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 3.4e-142 508.8 369 68.0
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 4.4e-142 508.4 358 70.7
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 7.1e-140 501.1 348 71.6
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 2.1e-139 499.6 364 69.2
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 3.6e-136 488.8 341 68.9
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 4.4e-134 481.9 287 81.9
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 8.4e-133 477.6 285 81.1
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 4.6e-131 471.9 353 67.7
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 4.8e-128 461.8 360 64.7
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 1.8e-127 459.9 280 79.3
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 5.8e-126 454.9 276 80.1
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 8.4e-125 451.1 334 65.3
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 2.1e-120 436.4 269 79.6
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 6.2e-120 434.9 349 64.2
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.5e-118 430.3 268 76.1
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 3.5e-115 419.1 270 75.2
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 2.8e-112 409.5 334 61.7
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 2.0e-110 403.3 364 58.0
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 1.0e-109 401.0 236 82.2
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 9.3e-108 394.4 348 57.8
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 6.3e-104 381.7 335 61.2
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 1.2e-102 377.5 268 66.8
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 1.3e-101 374.0 249 73.9
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 7.2e-100 368.2 283 64.7
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 4.8e-96 355.5 366 52.7
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 3.1e-95 352.8 357 52.9
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 1.0e-90 337.8 204 76.5
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 1.4e-87 327.4 358 50.6
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.8e-87 327.0 354 53.1
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 1.7e-80 303.9 349 50.1
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 5.3e-79 298.9 350 46.9
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 5.5e-76 288.9 234 67.1
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 1.6e-70 270.8 209 68.4
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 1.0e-69 268.1 166 77.1
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 3.0e-66 256.5 216 61.6
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 2.8e-56 223.4 194 60.8
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 8.0e-51 205.3 131 77.1
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 5.7e-49 199.1 112 79.5
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 2.8e-35 153.7 113 67.3
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 2.3e-29 134.0 187 44.4
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 2.0e-25 120.9 70 78.6
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 2.9e-24 117.1 70 77.1
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 5.6e-20 102.8 68 64.7
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 4.7e-19 99.8 64 75.0
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 1.8e-10 71.2 44 70.5
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 1.5e-09 68.2 43 67.4
Glyma.19G002700 Glycine max HOM05D004929 ORTHO05D215243 1.4e-07 61.6 82 46.3
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 1.6e-06 58.2 235 26.4


User provided reference genes

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