Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 1.3e-236 822.8 442 100.0
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 1.5e-224 782.7 453 92.5
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 1.5e-189 666.4 439 81.8
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 1.4e-182 643.3 439 71.8
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 1.0e-177 627.1 439 79.0
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 2.8e-175 619.0 435 69.7
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 2.4e-174 615.9 435 74.5
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 1.1e-171 607.1 440 75.0
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 5.5e-171 604.7 436 67.2
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 1.1e-168 597.0 442 72.2
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 9.7e-168 594.0 443 65.7
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.1e-166 590.5 429 67.1
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 1.5e-165 586.6 447 65.5
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.0e-165 586.3 434 65.0
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.0e-165 586.3 434 65.0
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 1.0e-164 583.9 440 67.0
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.0e-164 583.9 438 65.5
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 5.1e-161 571.6 437 70.5
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 1.1e-160 570.5 445 70.3
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 2.6e-160 569.3 436 63.8
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 4.4e-160 568.5 437 68.6
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 1.7e-159 566.6 441 68.3
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 2.2e-159 566.2 441 63.3
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 6.3e-159 564.7 426 68.5
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 1.8e-158 563.1 436 63.1
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 1.8e-158 563.1 436 62.6
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 5.3e-158 561.6 436 63.3
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 2.9e-156 555.8 460 61.5
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 2.9e-156 555.8 440 70.0
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 4.2e-155 552.0 440 62.7
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 5.5e-155 551.6 441 67.3
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 5.2e-153 545.0 439 67.0
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.7e-151 540.0 437 66.1
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 4.8e-151 538.5 422 61.8
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 8.2e-151 537.7 437 59.5
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 1.8e-150 536.6 421 67.7
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 7.0e-150 534.6 439 67.7
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 1.6e-149 533.5 415 69.6
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 2.0e-149 533.1 447 67.3
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 4.5e-149 531.9 440 67.7
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 7.7e-149 531.2 437 66.8
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 1.9e-147 526.6 505 53.3
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 2.5e-147 526.2 442 62.4
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 7.2e-147 524.6 435 66.2
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 1.2e-146 523.9 439 64.5
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 2.7e-146 522.7 440 66.8
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 2.7e-146 522.7 436 60.3
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 2.7e-146 522.7 430 64.9
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 8.0e-146 521.2 437 66.6
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 1.8e-145 520.0 439 65.6
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 1.8e-145 520.0 439 64.9
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.0e-145 518.8 443 59.8
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 5.2e-145 518.5 446 57.2
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 1.5e-144 516.9 438 67.8
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 1.3e-143 513.8 445 64.9
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 2.8e-143 512.7 354 74.0
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 1.6e-141 506.9 439 58.3
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 1.3e-140 503.8 436 64.7
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 3.8e-140 502.3 439 58.3
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.1e-139 500.7 410 61.0
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 9.4e-139 497.7 440 63.0
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 1.4e-137 493.8 455 62.2
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 5.2e-137 491.9 450 63.6
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 7.5e-136 488.0 435 63.7
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 4.8e-135 485.3 438 55.9
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 1.1e-134 484.2 374 70.9
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.0e-133 479.9 441 63.0
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 3.5e-133 479.2 384 68.2
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 1.0e-132 477.6 440 59.3
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 1.7e-132 476.9 443 54.9
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.5e-131 473.0 368 67.9
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 4.2e-131 472.2 440 58.4
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 7.2e-131 471.5 440 59.3
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.6e-130 470.3 440 58.2
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 8.0e-130 468.0 442 61.8
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 4.0e-129 465.7 440 60.9
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.2e-128 464.2 440 57.3
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 2.6e-128 463.0 441 58.7
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.4e-128 462.2 441 61.5
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 2.2e-127 459.9 548 46.9
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 2.2e-127 459.9 429 61.5
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 3.7e-127 459.1 433 55.7
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 6.3e-127 458.4 442 56.1
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 1.4e-126 457.2 441 55.8
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.8e-126 456.8 441 60.5
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 3.2e-126 456.1 441 55.6
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 9.2e-126 454.5 442 56.8
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 2.7e-125 453.0 352 62.2
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 2.9e-124 449.5 433 55.7
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 9.2e-118 427.9 441 58.3
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 4.3e-115 419.1 446 57.4
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 1.8e-113 413.7 328 61.9
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 4.9e-111 405.6 439 54.0
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 1.9e-110 403.7 413 55.7
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 6.6e-108 395.2 328 59.5
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 8.1e-106 388.3 315 61.6
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 1.1e-105 387.9 277 66.8
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 9.6e-99 364.8 249 70.7
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 1.6e-98 364.0 312 66.3
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 6.6e-92 342.0 332 60.8
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 7.3e-91 338.6 276 62.3
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 3.0e-84 316.6 267 71.9
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 8.1e-82 308.5 327 51.1
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 9.6e-67 258.5 407 43.0
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 3.7e-66 256.5 251 55.0
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 3.9e-60 236.5 394 41.1
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 5.1e-60 236.1 162 69.8
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 3.8e-55 219.9 394 39.1
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 7.4e-51 205.7 394 37.3
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 1.3e-50 204.9 394 36.8
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 2.2e-50 204.1 213 64.3
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 3.7e-50 203.4 394 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 4.5e-48 196.4 406 38.9
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 4.5e-48 196.4 207 52.2
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.2e-45 188.3 219 44.3
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 8.2e-42 175.6 114 68.4
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 4.1e-41 173.3 113 70.8
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 1.3e-39 168.3 115 67.8
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 1.6e-37 161.4 215 43.3
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 6.7e-36 156.0 143 56.6
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 9.7e-35 152.1 100 69.0
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 2.9e-31 140.6 112 61.6
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 3.8e-31 140.2 138 52.2
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 5.5e-30 136.3 196 43.9
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 5.5e-30 136.3 100 66.0
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 4.1e-25 120.2 113 55.8
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 9.1e-25 119.0 88 61.4
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 9.1e-17 92.4 56 76.8
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 5.6e-14 83.2 61 62.3
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 4.0e-12 77.0 55 65.5
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 6.8e-12 76.3 66 60.6
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 1.7e-10 71.6 58 62.1
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 3.2e-09 67.4 38 78.9
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 4.1e-09 67.0 38 78.9
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 2.0e-08 64.7 38 76.3
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 1.0e-07 62.4 40 72.5
MBI10_g15884_MAGBIO Magnolia biondii HOM05D045841 ORTHO05D006945 8.6e-07 59.3 98 38.8
Lsat_1_v5_gn_1_127740 Lactuca sativa HOM05D001044 ORTHO05D008486 7.3e-06 56.2 39 66.7


User provided reference genes

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