Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 0.0e+00 1212.6 755 100.0
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 0.0e+00 1123.2 755 94.8
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 1.2e-226 790.4 763 74.2
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 6.2e-207 724.9 523 79.3
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 1.5e-192 677.2 762 61.8
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 1.8e-185 653.7 727 69.1
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 4.2e-179 632.5 522 61.3
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 2.1e-178 630.2 716 65.6
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 4.8e-175 619.0 759 63.5
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 5.9e-173 612.1 773 61.8
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 6.1e-170 602.1 677 68.8
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 1.0e-169 601.3 757 63.4
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 3.0e-169 599.7 757 64.3
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 2.6e-168 596.7 689 67.1
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 2.6e-168 596.7 683 68.7
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 7.2e-163 578.6 523 65.2
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 9.4e-163 578.2 520 66.2
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 7.9e-162 575.1 772 48.6
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 7.9e-162 575.1 772 48.6
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 1.0e-161 574.7 761 62.5
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 2.0e-160 570.5 761 62.4
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 4.4e-160 569.3 455 62.6
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 1.6e-157 560.8 760 61.1
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 2.2e-156 557.0 768 60.2
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 6.5e-156 555.4 770 61.2
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 8.5e-156 555.1 771 60.8
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 1.9e-155 553.9 536 61.8
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 2.5e-155 553.5 536 61.8
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 2.5e-155 553.5 767 60.4
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 1.6e-154 550.8 768 60.8
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 8.8e-153 545.0 770 58.3
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 1.2e-152 544.7 671 66.2
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 3.3e-152 543.1 518 64.1
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 3.3e-152 543.1 757 60.8
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 3.3e-152 543.1 727 62.4
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 3.3e-152 543.1 776 59.0
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 5.7e-152 542.3 676 64.1
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 6.3e-151 538.9 811 57.6
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 1.3e-148 531.2 666 64.9
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 2.2e-148 530.4 679 57.9
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 2.5e-147 526.9 769 58.6
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 3.6e-146 523.1 674 63.6
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 1.4e-145 521.2 713 59.5
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 4.0e-145 519.6 677 62.6
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 8.8e-145 518.5 713 59.3
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 3.7e-143 513.1 534 59.2
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 4.8e-143 512.7 681 62.7
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 1.4e-142 511.1 669 64.4
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 3.1e-142 510.0 748 59.8
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 7.0e-142 508.8 775 56.8
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 1.2e-141 508.1 701 61.2
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 2.0e-141 507.3 758 59.0
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 1.0e-140 505.0 680 62.4
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.3e-140 504.6 785 49.8
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 1.7e-140 504.2 794 55.8
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 2.9e-140 503.4 760 53.4
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 3.8e-140 503.1 761 57.6
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 5.0e-140 502.7 762 58.4
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 8.6e-140 501.9 506 61.5
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 1.1e-139 501.5 763 54.9
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 9.5e-139 498.4 811 56.1
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 9.5e-139 498.4 535 56.4
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 1.0e-137 495.0 513 60.6
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 5.2e-137 492.7 537 58.1
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 1.5e-136 491.1 519 60.5
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 3.4e-136 490.0 515 59.8
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 1.4e-134 484.6 520 58.5
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 2.7e-133 480.3 510 55.1
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 1.0e-132 478.4 514 58.8
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 1.0e-132 478.4 447 65.5
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.7e-132 477.6 362 73.5
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 1.1e-131 474.9 528 57.8
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 7.3e-131 472.2 498 60.6
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 9.5e-131 471.9 472 62.7
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 3.6e-130 469.9 511 54.0
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 1.4e-129 468.0 564 69.3
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 1.2e-128 464.9 670 55.4
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 2.6e-128 463.8 515 57.9
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 4.4e-128 463.0 513 58.1
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 8.3e-127 458.8 463 61.3
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 2.7e-125 453.8 461 60.7
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 6.6e-124 449.1 535 54.2
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 1.9e-123 447.6 554 67.5
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 9.5e-123 445.3 657 58.4
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 2.3e-121 440.7 529 56.5
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 2.3e-121 440.7 338 74.6
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 5.2e-121 439.5 542 68.1
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 8.9e-121 438.7 594 61.4
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 6.4e-119 432.6 451 60.1
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 2.0e-117 427.6 362 67.1
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 4.6e-117 426.4 682 57.5
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 4.6e-117 426.4 517 53.8
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 4.6e-117 426.4 517 53.8
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 4.6e-117 426.4 517 53.4
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 6.6e-116 422.5 357 67.2
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 1.9e-115 421.0 517 53.2
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 4.3e-115 419.9 517 53.6
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 1.2e-114 418.3 330 73.3
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 9.9e-104 382.1 374 64.2
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 4.9e-103 379.8 435 55.6
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 1.2e-98 365.2 435 54.7
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 3.3e-91 340.5 529 41.8
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 4.5e-88 330.1 529 40.6
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 7.1e-78 296.2 655 33.7
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 2.8e-74 284.3 201 66.7
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 3.1e-65 254.2 270 48.9
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 1.9e-46 191.8 388 40.7
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 1.4e-44 185.7 373 35.7
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 3.0e-36 157.9 338 32.5
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 5.7e-35 153.7 393 37.9
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 3.8e-31 141.0 360 28.3
EL10Ac2g03526 Beta vulgaris HOM05D006844 ORTHO05D008504 5.0e-31 140.6 215 56.7
SalBow1G4926 Salvia bowleyana HOM05D006844 ORTHO05D008504 6.3e-26 123.6 134 47.8
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 6.1e-21 107.1 61 80.3
Cpa.g.sc130.59 Carica papaya HOM05D006844 ORTHO05D008504 5.2e-12 77.4 110 44.5
vmacro05905 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 1.7e-07 62.4 41 70.7
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 4.3e-06 57.8 138 27.5


User provided reference genes

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