Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 6.2e-183 644.0 335 100.0
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 3.0e-177 625.2 327 98.2
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 9.3e-163 577.0 337 89.6
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 4.0e-158 561.6 339 86.4
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 3.2e-155 552.0 334 84.1
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 2.4e-150 535.8 330 83.0
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 8.4e-148 527.3 335 81.2
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 1.1e-147 526.9 332 82.2
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 3.2e-147 525.4 335 82.1
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 4.2e-147 525.0 335 82.1
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 7.1e-147 524.2 335 81.5
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.2e-146 523.5 335 80.9
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 2.1e-146 522.7 334 79.6
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 4.6e-146 521.5 335 81.2
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 6.0e-146 521.2 336 81.8
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 6.0e-146 521.2 341 80.1
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 3.9e-145 518.5 335 80.9
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 5.7e-144 514.6 332 79.5
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 9.6e-144 513.8 339 79.9
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 2.1e-143 512.7 335 80.6
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 3.7e-143 511.9 340 76.8
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 3.7e-143 511.9 335 78.2
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 3.7e-143 511.9 294 87.4
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 6.3e-143 511.1 333 77.8
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 6.3e-143 511.1 337 78.3
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 8.2e-143 510.8 310 84.2
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.8e-142 509.6 332 80.7
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 1.8e-142 509.6 344 78.8
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 2.4e-142 509.2 330 80.3
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 4.1e-142 508.4 335 77.0
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 9.0e-142 507.3 332 77.7
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 1.5e-141 506.5 341 78.3
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.5e-141 506.5 342 78.1
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.4e-141 505.4 343 78.4
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 4.5e-141 505.0 319 83.1
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 1.0e-140 503.8 294 85.7
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 1.0e-140 503.8 294 85.7
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.7e-140 503.1 343 78.1
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 1.7e-140 503.1 323 80.2
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 2.9e-140 502.3 305 83.6
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 2.9e-140 502.3 337 77.4
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 2.9e-140 502.3 335 77.6
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 3.8e-140 501.9 309 83.2
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 1.1e-139 500.4 338 77.2
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 1.4e-139 500.0 338 76.3
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 1.4e-139 500.0 336 77.4
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 1.9e-139 499.6 349 76.5
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 2.5e-139 499.2 335 78.2
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 3.2e-139 498.8 322 80.1
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 5.5e-139 498.0 340 78.2
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 9.3e-139 497.3 345 75.7
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 2.1e-138 496.1 326 78.5
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 4.6e-138 495.0 337 79.2
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.8e-137 493.0 337 76.9
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 2.3e-137 492.7 328 79.0
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 5.1e-137 491.5 340 74.4
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 1.1e-136 490.3 333 74.5
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 1.9e-136 489.6 346 74.3
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 4.3e-136 488.4 340 75.0
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 4.3e-136 488.4 334 76.9
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 4.3e-136 488.4 338 74.9
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 7.4e-136 487.6 347 72.9
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.3e-135 486.9 333 76.6
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 1.6e-135 486.5 325 78.2
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 2.2e-135 486.1 339 74.6
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 3.7e-135 485.3 339 74.3
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 3.7e-135 485.3 339 74.3
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 3.7e-135 485.3 339 74.3
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 4.8e-135 485.0 339 74.3
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 8.2e-135 484.2 322 78.3
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 8.2e-135 484.2 337 76.0
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 1.1e-134 483.8 339 74.0
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 1.4e-134 483.4 336 75.0
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 1.8e-134 483.0 299 80.9
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 2.4e-134 482.6 334 73.4
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.1e-134 482.3 337 74.2
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 5.3e-134 481.5 337 73.9
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 9.1e-134 480.7 292 80.5
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 2.0e-133 479.6 338 73.7
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 3.4e-133 478.8 328 75.9
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.3e-132 476.9 338 73.7
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 8.8e-129 464.2 271 84.1
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 1.3e-127 460.3 280 80.0
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 4.8e-127 458.4 282 79.8
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 1.8e-126 456.4 324 73.1
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 2.4e-126 456.1 326 74.2
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 1.2e-125 453.8 343 72.0
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 4.5e-125 451.8 281 79.4
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 6.5e-124 448.0 280 79.3
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 2.1e-122 443.0 273 79.5
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.7e-122 442.6 262 85.9
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 1.8e-121 439.9 275 77.1
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 9.7e-120 434.1 364 64.3
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 3.7e-119 432.2 335 71.3
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.4e-110 403.7 273 78.4
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 3.8e-108 395.6 211 94.3
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 1.9e-107 393.3 246 82.5
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 2.1e-106 389.8 250 77.2
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 4.7e-106 388.7 237 82.3
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 9.8e-104 380.9 235 81.3
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.4e-102 377.1 235 79.1
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.4e-102 375.2 248 81.5
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.8e-100 369.0 244 80.3
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.2e-99 365.9 255 77.6
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 7.2e-99 364.8 249 76.7
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 3.6e-98 362.5 275 65.1
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 4.4e-96 355.5 262 64.9
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 4.5e-93 345.5 202 81.7
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 7.3e-91 338.2 311 63.7
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 2.8e-90 336.3 250 70.8
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 1.2e-80 304.3 263 56.3
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 1.1e-78 297.7 159 91.2
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 9.5e-75 284.6 214 69.2
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 6.4e-63 245.4 211 61.6
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.4e-56 223.0 159 74.8
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 1.7e-52 210.7 335 42.4
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 3.9e-52 209.5 336 42.6
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 9.6e-51 204.9 118 87.3
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 2.1e-50 203.8 120 80.8
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 4.8e-50 202.6 167 62.3
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 1.7e-47 194.1 116 81.9
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 7.1e-46 188.7 128 73.4
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 9.3e-46 188.3 239 47.3
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 2.7e-37 160.2 337 37.4
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 5.6e-35 152.5 234 41.9
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.0e-33 146.4 82 84.1
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 1.8e-28 131.0 280 32.1
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 3.0e-28 130.2 124 58.1
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 8.7e-28 128.6 63 93.7
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 1.5e-27 127.9 76 84.2
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 1.3e-26 124.8 77 76.6
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 2.9e-23 113.6 334 27.2
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 8.8e-20 102.1 102 52.0
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 6.9e-17 92.4 81 61.7
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 1.0e-15 88.6 77 61.0
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 1.3e-15 88.2 187 40.1
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 3.3e-11 73.6 45 75.6
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 3.4e-08 63.5 59 59.3
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 1.7e-07 61.2 103 40.8
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 2.2e-07 60.8 53 60.4
FvH4_6g53451 Fragaria vesca HOM05D005629 ORTHO05D196308 1.9e-06 57.8 74 44.6


User provided reference genes

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