Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007214 Carpinus fangiana HOM05D010221 ORTHO05D013290 2.7e-95 352.1 186 100.0
Haze_14889 Corylus avellana HOM05D010221 ORTHO05D013290 6.9e-59 231.1 151 83.4
Haze_02740 Corylus avellana HOM05D010221 ORTHO05D013290 6.6e-25 118.2 82 75.6
CiPaw.04G038000 Carya illinoinensis HOM05D010221 ORTHO05D013290 3.3e-24 115.9 151 49.7
CiPaw.03G057100 Carya illinoinensis HOM05D010221 ORTHO05D013290 1.2e-21 107.5 115 54.8
Thecc.04G039300 Theobroma cacao HOM05D000042 ORTHO05D003657 4.9e-20 102.1 151 42.4
TAR371G0720 Trochodendron aralioides HOM05D000042 ORTHO05D003657 3.1e-19 99.4 128 45.3
CiPaw.04G038500 Carya illinoinensis HOM05D010221 ORTHO05D013290 3.3e-16 89.4 113 50.4
CiPaw.04G037700 Carya illinoinensis HOM05D010221 ORTHO05D013290 4.3e-16 89.0 113 50.4
Dinv33326 Davidia involucrata HOM05D007835 ORTHO05D008482 9.5e-16 87.8 153 37.9
Prupe.3G307800 Prunus persica HOM05D000042 ORTHO05D003657 8.0e-15 84.7 154 39.6
CiPaw.04G038200 Carya illinoinensis HOM05D010221 ORTHO05D013290 1.0e-14 84.3 113 47.8
COL.COLO4_13278 Corchorus olitorius HOM05D010221 ORTHO05D013290 1.0e-14 84.3 133 38.3
Duzib147G1395 Durio zibethinus HOM05D000042 ORTHO05D003657 1.0e-14 84.3 151 36.4
MD05G1037100 Malus domestica HOM05D000042 ORTHO05D003657 1.4e-14 84.0 112 46.4
MD17G1001300 Malus domestica HOM05D000042 ORTHO05D003657 1.4e-14 84.0 116 44.0
FAN05G2583 Fragaria x ananassa HOM05D000042 ORTHO05D003657 2.3e-14 83.2 137 39.4
FAN14G3584 Fragaria x ananassa HOM05D000042 ORTHO05D003657 2.3e-14 83.2 137 39.4
Duzib264G0957 Durio zibethinus HOM05D000042 ORTHO05D003657 3.1e-14 82.8 151 36.4
Dinv33328 Davidia involucrata HOM05D010221 ORTHO05D013290 5.2e-14 82.0 158 36.1
MD10G1041100 Malus domestica HOM05D000042 ORTHO05D003657 2.0e-13 80.1 114 43.9
FvH4_6g53741 Fragaria vesca HOM05D000042 ORTHO05D003657 3.4e-13 79.3 137 38.0
Potri.001G328600 Populus trichocarpa HOM05D000042 ORTHO05D003657 2.9e-12 76.3 121 36.4
TAR371G0984 Trochodendron aralioides HOM05D000042 ORTHO05D003657 1.4e-11 73.9 138 35.5
Lj7C610T14 Lonicera japonica HOM05D010221 ORTHO05D013290 3.2e-11 72.8 75 49.3
MD09G1009100 Malus domestica HOM05D000042 ORTHO05D003657 3.2e-11 72.8 113 41.6
Thecc.02G204500 Theobroma cacao HOM05D010221 ORTHO05D003657 3.2e-11 72.8 137 33.6
Atru.chr11.2347 Acer truncatum HOM05D000042 ORTHO05D003657 3.5e-10 69.3 120 35.0
RcHm_v2.0_Chr2g0175841 Rosa chinensis HOM05D010221 ORTHO05D013290 3.5e-10 69.3 69 55.1
Actinidia05897 Actinidia chinensis HOM05D000042 ORTHO05D003657 4.6e-10 68.9 113 41.6
Dinv17579 Davidia involucrata HOM05D010014 ORTHO05D003657 4.6e-10 68.9 116 39.7
MSTRG.8016 Avicennia marina HOM05D000042 ORTHO05D003657 1.7e-09 67.0 119 32.8
Hma1.2p1_0065F.1_g035210 Hydrangea macrophylla HOM05D000042 ORTHO05D003657 3.0e-09 66.2 119 37.8
FAN09G0960 Fragaria x ananassa HOM05D010221 ORTHO05D013290 3.9e-09 65.9 86 43.0
Peaxi162Scf00023g02913 Petunia axillaris HOM05D000042 ORTHO05D003657 1.1e-08 64.3 117 30.8
CAN.G683.2 Capsicum annuum HOM05D000042 ORTHO05D003657 1.5e-08 63.9 129 33.3
Rhsim08G0042000 Rhododendron simsii HOM05D000042 ORTHO05D003657 1.5e-08 63.9 137 35.0
COL.COLO4_13273 Corchorus olitorius HOM05D010221 ORTHO05D013290 3.3e-08 62.8 98 41.8
Rhsim10G0005400 Rhododendron simsii HOM05D000042 ORTHO05D003657 4.3e-08 62.4 100 42.0
Cfa009378 Carpinus fangiana HOM05D000042 ORTHO05D003657 7.3e-08 61.6 135 31.1
GSVIVG01010513001 Vitis vinifera HOM05D010221 ORTHO05D003657 7.3e-08 61.6 94 41.5
HanXRQChr17g0550551 Helianthus annuus HOM05D000042 ORTHO05D003657 9.5e-08 61.2 124 33.9
Sopen12g029840 Solanum pennellii HOM05D000042 ORTHO05D003657 9.5e-08 61.2 118 32.2
PGR102G1466 Punica granatum HOM05D000042 ORTHO05D003657 1.2e-07 60.8 114 36.0
QL03p052074 Quercus lobata HOM05D010221 ORTHO05D003657 1.2e-07 60.8 122 31.1
Eucgr.B03511 Eucalyptus grandis HOM05D010221 ORTHO05D003657 1.6e-07 60.5 122 30.3
PGR119G2240 Punica granatum HOM05D000042 ORTHO05D003657 1.6e-07 60.5 132 33.3
Sabra16G0210300 Salix brachista HOM05D010221 ORTHO05D013290 1.6e-07 60.5 99 36.4
FAN09G3947 Fragaria x ananassa HOM05D010221 ORTHO05D013290 2.1e-07 60.1 68 47.1
CAN.G683.7 Capsicum annuum HOM05D000042 ORTHO05D003657 2.8e-07 59.7 117 31.6
ECA246G3800 Erigeron canadensis HOM05D000042 ORTHO05D003657 4.7e-07 58.9 131 32.8
Solyc12g087810.3 Solanum lycopersicum HOM05D010014 ORTHO05D003657 4.7e-07 58.9 112 33.0
TAR371G0236 Trochodendron aralioides HOM05D000042 ORTHO05D003657 4.7e-07 58.9 134 31.3
vmacro18355 Vaccinium macrocarpon HOM05D000042 ORTHO05D003657 4.7e-07 58.9 95 38.9
FAN02G3584 Fragaria x ananassa HOM05D010221 ORTHO05D013290 6.2e-07 58.5 61 50.8
Solyc12g087830.2 Solanum lycopersicum HOM05D000042 ORTHO05D003657 6.2e-07 58.5 118 33.1
MSTRG.490 Avicennia marina HOM05D000042 ORTHO05D003657 8.0e-07 58.2 115 31.3
Lsat_1_v5_gn_4_1060 Lactuca sativa HOM05D000042 ORTHO05D003657 8.0e-07 58.2 126 33.3
CSS0034367 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 1.1e-06 57.8 131 30.5
Potri.003G169850 Populus trichocarpa HOM05D000042 ORTHO05D003657 1.1e-06 57.8 121 28.1
Eucgr.H04618 Eucalyptus grandis HOM05D000042 ORTHO05D003657 1.4e-06 57.4 140 30.7
THA.LOC104822893 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 1.4e-06 57.4 153 26.8
Duzib251G0403 Durio zibethinus HOM05D000042 ORTHO05D003657 1.8e-06 57.0 143 30.1
Cc11_g17100 Coffea canephora HOM05D000042 ORTHO05D003657 2.3e-06 56.6 124 33.1
Sabra03G0124400 Salix brachista HOM05D010221 ORTHO05D013290 2.3e-06 56.6 160 26.2
GSVIVG01033067001 Vitis vinifera HOM05D000042 ORTHO05D003657 5.2e-06 55.5 146 33.6
Actinidia08058 Actinidia chinensis HOM05D000042 ORTHO05D003657 6.8e-06 55.1 115 33.0
ECA234G1450 Erigeron canadensis HOM05D000042 ORTHO05D003657 6.8e-06 55.1 128 29.7


User provided reference genes

Program Settings