Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.1e-292 1009.2 500 100.0
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.3e-253 879.4 505 85.9
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 3.9e-242 841.3 524 80.3
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.8e-234 815.8 499 79.4
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.3e-232 809.7 502 78.7
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 8.5e-229 797.0 491 78.2
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 7.2e-228 793.9 503 76.7
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.6e-227 792.7 492 79.3
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 2.3e-226 788.9 498 77.9
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.3e-225 785.0 503 77.5
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 2.8e-224 781.9 479 78.5
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 6.3e-224 780.8 503 76.1
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 6.3e-224 780.8 501 76.2
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 1.1e-223 780.0 494 76.5
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.2e-222 776.5 478 78.9
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.0e-222 775.8 478 78.9
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.5e-222 775.0 490 76.7
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 1.0e-221 773.5 478 79.3
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.9e-221 771.9 505 74.7
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 8.5e-221 770.4 482 78.0
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.1e-220 770.0 491 76.4
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.1e-219 765.8 507 75.0
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 1.8e-218 762.7 489 75.7
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 2.3e-218 762.3 502 74.9
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.2e-217 760.0 498 74.3
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.5e-217 759.6 498 74.5
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 3.4e-217 758.4 481 76.1
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 3.1e-215 751.9 522 71.5
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 5.9e-214 747.7 505 71.9
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.3e-213 746.5 489 75.3
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.3e-213 745.7 502 73.1
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.9e-213 745.3 522 71.3
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.9e-213 745.3 489 74.2
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 2.9e-213 745.3 506 72.3
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 2.9e-213 745.3 502 73.3
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 5.0e-213 744.6 473 77.2
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.5e-212 742.3 474 76.8
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.3e-212 741.9 500 72.6
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.1e-211 739.2 506 73.3
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.1e-211 739.2 506 73.3
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 2.8e-211 738.8 533 70.7
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 6.1e-211 737.6 476 74.8
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 8.0e-211 737.3 476 75.0
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 5.2e-210 734.6 500 72.6
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 5.2e-210 734.6 507 71.6
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 5.2e-210 734.6 480 73.3
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 6.8e-210 734.2 474 75.5
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.2e-209 733.4 492 73.4
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.2e-209 733.4 477 74.6
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.5e-209 733.0 506 71.5
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.0e-209 732.6 498 72.1
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 2.6e-209 732.3 494 72.1
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 5.7e-209 731.1 474 73.8
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.2e-208 729.2 506 72.7
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.2e-208 729.2 487 74.7
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.1e-207 726.9 489 75.1
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.1e-207 726.9 506 71.9
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.8e-207 726.1 475 73.7
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 4.1e-207 724.9 493 73.2
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 5.4e-207 724.5 500 71.2
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 2.7e-206 722.2 492 70.9
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 5.9e-206 721.1 485 73.0
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 7.8e-206 720.7 493 71.2
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.3e-205 719.9 469 74.0
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 2.3e-205 719.2 481 72.6
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.8e-205 718.4 502 71.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 5.0e-205 718.0 494 72.5
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 6.6e-205 717.6 466 75.8
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 8.6e-205 717.2 516 69.4
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 1.1e-204 716.8 472 72.0
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.9e-204 716.1 476 72.3
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.9e-204 716.1 476 72.3
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 7.3e-204 714.1 477 71.3
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.2e-203 713.4 489 73.0
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 3.6e-203 711.8 478 72.4
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.8e-202 709.5 490 69.8
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.8e-202 709.5 476 71.8
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 5.2e-202 708.0 476 71.6
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 5.2e-202 708.0 458 75.5
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 6.8e-202 707.6 527 66.8
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 2.0e-201 706.1 489 69.5
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 4.4e-201 704.9 476 71.8
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 4.4e-201 704.9 512 67.4
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.3e-200 703.4 502 69.3
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.1e-199 700.3 517 68.7
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.1e-199 700.3 472 73.3
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.4e-199 699.1 506 70.4
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 4.1e-199 698.4 502 69.3
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 9.2e-199 697.2 474 71.3
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 1.6e-198 696.4 477 71.1
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 2.0e-198 696.0 487 71.0
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 6.0e-198 694.5 474 71.1
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 7.8e-198 694.1 465 73.1
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 2.3e-197 692.6 501 67.7
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.9e-197 691.8 480 69.0
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 3.9e-197 691.8 489 68.5
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.3e-196 688.7 473 71.0
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.2e-195 686.8 641 57.6
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 2.1e-195 686.0 473 70.0
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.8e-195 685.6 473 69.3
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 3.6e-195 685.3 491 69.5
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 6.8e-194 681.0 473 72.5
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.2e-193 680.2 462 70.6
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.6e-193 679.1 568 61.3
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 3.4e-193 678.7 475 70.1
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.4e-193 678.3 459 70.6
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.3e-192 676.8 470 68.7
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 4.9e-192 674.9 483 68.5
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 3.2e-191 672.2 467 70.0
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 1.6e-187 659.8 477 66.9
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 2.0e-185 652.9 488 68.4
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.7e-184 649.8 472 68.0
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 2.5e-180 636.0 544 61.9
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.1e-178 629.0 463 65.9
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 2.7e-174 615.9 363 82.6
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 9.6e-172 607.4 497 64.6
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.4e-170 603.6 366 80.1
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 7.3e-164 581.3 496 62.9
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 1.5e-161 573.5 490 59.4
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 3.4e-161 572.4 391 70.3
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.9e-154 548.1 509 57.2
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 6.4e-152 541.6 311 88.1
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.1e-146 522.7 360 73.1
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 9.0e-146 521.2 362 68.8
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 3.4e-145 519.2 466 54.9
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 4.5e-145 518.8 470 54.0
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 9.3e-143 511.1 469 56.1
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.8e-141 506.9 379 68.1
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.5e-140 503.8 326 74.8
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.3e-139 500.7 349 71.1
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.0e-129 466.8 289 76.8
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 3.5e-113 412.9 280 71.8
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 6.1e-110 402.1 245 75.5
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.0e-109 401.4 482 47.3
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 2.7e-105 386.7 475 45.1
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 2.2e-99 367.1 215 79.5
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 7.7e-97 358.6 219 78.1
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 5.5e-95 352.4 216 77.8
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.6e-94 350.9 258 70.9
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 3.7e-91 339.7 258 64.3
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 5.4e-90 335.9 255 65.1
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 7.8e-89 332.0 229 71.2
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 1.0e-88 331.6 453 40.6
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.1e-87 328.2 228 67.5
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 2.2e-83 313.9 203 73.4
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 5.8e-76 289.3 187 78.1
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 4.9e-75 286.2 201 74.1
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 1.4e-74 284.6 274 50.7
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 4.3e-71 273.1 490 35.5
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.4e-66 258.1 287 53.3
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.3e-63 246.5 483 34.2
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.8e-62 243.8 180 70.6
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.9e-55 221.1 173 62.4
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.0e-52 211.1 137 75.2
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.4e-52 210.3 277 45.8
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 9.6e-47 192.2 114 77.2
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.8e-46 190.7 125 67.2
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 3.4e-44 183.7 124 69.4
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.0e-40 170.6 136 58.8
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 2.9e-35 154.1 325 36.0
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.2e-33 148.7 149 53.7
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.2e-33 148.7 80 88.8
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 2.1e-33 147.9 321 34.6
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 1.3e-32 145.2 92 67.4
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 4.3e-31 140.2 164 51.2
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.6e-30 138.3 88 73.9
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.4e-29 134.4 76 84.2
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 7.6e-28 129.4 77 80.5
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 4.2e-26 123.6 81 69.1
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 7.9e-25 119.4 102 64.7
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 1.3e-24 118.6 91 63.7
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.8e-24 118.2 64 87.5
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 6.7e-24 116.3 78 64.1
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 9.7e-23 112.5 64 79.7
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 6.3e-22 109.8 84 63.1
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 7.2e-18 96.3 64 65.6
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 9.4e-18 95.9 58 70.7
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 6.1e-17 93.2 55 74.5
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 6.1e-17 93.2 90 56.7
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 7.9e-17 92.8 80 62.5
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 2.4e-13 81.3 51 68.6
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.3e-13 80.1 164 36.0
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 2.5e-10 71.2 45 73.3
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.2e-10 70.5 67 52.2
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 9.4e-10 69.3 111 42.3
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 3.9e-08 63.9 44 61.4
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.1e-07 62.4 155 30.3


User provided reference genes

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