Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 8.5e-105 383.6 190 100.0
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 4.0e-102 374.8 190 97.4
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 1.3e-84 316.6 197 80.7
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 7.8e-82 307.4 198 79.8
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 3.9e-81 305.1 198 79.8
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 1.9e-75 286.2 199 72.9
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 2.4e-75 285.8 199 72.9
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 6.0e-74 281.2 199 71.9
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.1e-72 276.9 199 70.9
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.5e-72 275.8 199 70.4
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 2.5e-72 275.8 212 69.8
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.0e-69 266.2 192 70.8
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 2.0e-69 266.2 212 67.9
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 1.7e-68 263.1 202 69.8
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 5.4e-67 258.1 197 69.0
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.6e-66 256.5 203 69.0
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 3.5e-66 255.4 200 69.0
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 4.6e-66 255.0 197 69.0
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 1.7e-65 253.1 208 65.9
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 6.6e-65 251.1 215 61.4
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 8.6e-65 250.8 220 61.8
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 1.9e-64 249.6 208 64.4
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 2.5e-64 249.2 197 65.5
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 6.2e-63 244.6 205 66.3
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 1.4e-62 243.4 202 65.8
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 1.4e-62 243.4 197 65.5
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 5.2e-62 241.5 200 66.0
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 2.6e-61 239.2 211 63.0
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 2.6e-61 239.2 196 65.8
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 5.8e-61 238.0 207 63.3
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 7.6e-61 237.7 200 65.0
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 7.6e-61 237.7 202 61.9
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 1.3e-60 236.9 203 66.0
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 1.3e-60 236.9 192 66.1
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 2.2e-60 236.1 198 65.2
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 6.4e-60 234.6 194 67.5
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 6.4e-60 234.6 210 64.3
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 1.1e-59 233.8 183 67.8
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 1.4e-59 233.4 194 63.9
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 2.4e-59 232.6 211 64.0
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 3.2e-59 232.3 205 64.9
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 4.2e-59 231.9 206 61.7
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 4.2e-59 231.9 189 64.6
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 9.3e-59 230.7 182 69.8
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.2e-58 230.3 150 74.7
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 1.2e-58 230.3 205 64.4
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.3e-57 226.9 196 63.3
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 1.3e-57 226.9 192 63.0
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 1.7e-57 226.5 191 62.8
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 2.3e-57 226.1 200 62.0
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 6.6e-57 224.6 195 62.6
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 1.1e-56 223.8 174 66.7
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 1.9e-56 223.0 192 62.0
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 2.5e-56 222.6 198 61.6
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 3.3e-56 222.2 212 57.5
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 4.3e-56 221.9 204 61.3
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 4.3e-56 221.9 193 62.7
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 5.6e-56 221.5 207 59.4
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 7.3e-56 221.1 189 64.0
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 7.3e-56 221.1 189 64.0
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 1.3e-55 220.3 201 60.2
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 1.3e-55 220.3 198 61.6
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 1.3e-55 220.3 205 59.5
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 1.6e-55 219.9 202 59.4
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 2.1e-55 219.5 175 64.6
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 2.8e-55 219.2 192 62.5
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 3.6e-55 218.8 219 56.6
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 4.8e-55 218.4 148 76.4
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.1e-54 217.2 206 58.7
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 1.1e-54 217.2 195 59.0
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 1.8e-54 216.5 120 84.2
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 3.1e-54 215.7 206 58.7
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 5.3e-54 214.9 148 73.6
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 1.2e-53 213.8 190 63.2
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 1.5e-53 213.4 202 59.9
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 2.0e-53 213.0 203 55.2
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 2.6e-53 212.6 194 61.3
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 3.4e-53 212.2 194 59.8
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 7.6e-53 211.1 194 60.3
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 7.6e-53 211.1 207 57.5
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 1.7e-52 209.9 174 62.6
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 2.2e-52 209.5 196 60.7
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 4.9e-52 208.4 207 57.0
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 6.4e-52 208.0 197 58.9
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.1e-51 207.2 173 62.4
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.4e-51 206.8 191 58.6
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 5.4e-51 204.9 171 62.6
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 5.4e-51 204.9 194 57.2
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 2.7e-50 202.6 165 68.5
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 4.6e-50 201.8 181 58.0
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 4.6e-50 201.8 162 63.0
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 6.0e-50 201.4 199 57.3
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 6.0e-50 201.4 181 56.9
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 7.9e-50 201.1 165 65.5
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 1.0e-49 200.7 119 77.3
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 3.9e-49 198.7 190 56.3
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 3.9e-49 198.7 190 56.3
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 3.9e-49 198.7 169 60.4
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 6.6e-49 198.0 192 56.8
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 6.6e-49 198.0 171 62.6
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 1.9e-48 196.4 196 56.1
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 2.5e-48 196.1 196 56.1
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 2.4e-46 189.5 187 55.1
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 2.4e-46 189.5 114 73.7
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 5.3e-46 188.3 179 58.7
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 5.3e-46 188.3 160 58.1
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 1.5e-45 186.8 172 55.2
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 2.0e-45 186.4 114 72.8
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 2.6e-45 186.0 168 54.2
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.9e-44 182.6 132 64.4
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 4.9e-44 181.8 132 63.6
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.9e-43 179.9 109 76.1
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.0e-41 174.1 109 74.3
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.8e-41 173.3 146 58.9
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.3e-41 172.9 145 57.2
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 3.9e-41 172.2 178 51.1
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 5.6e-40 168.3 113 67.3
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 6.2e-39 164.9 108 69.4
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 6.2e-39 164.9 150 57.3
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 8.1e-39 164.5 171 54.4
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 1.1e-35 154.1 166 52.4
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 8.7e-33 144.4 146 54.8
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 3.8e-28 129.0 133 45.9
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 6.5e-28 128.3 124 49.2
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 2.3e-25 119.8 144 43.8
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 1.1e-22 110.9 112 47.3
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 7.4e-16 88.2 86 55.8
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 2.6e-08 63.2 129 40.3


User provided reference genes

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