Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 2.8e-132 475.3 251 100.0
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 4.3e-128 461.5 251 97.2
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 1.2e-127 459.9 251 96.4
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 6.6e-97 357.8 238 78.6
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 2.2e-84 316.2 200 86.5
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 4.9e-84 315.1 250 70.0
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 3.2e-83 312.4 245 70.6
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 2.7e-82 309.3 250 68.8
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 3.0e-81 305.8 249 66.7
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 3.0e-81 305.8 250 67.6
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 5.1e-81 305.1 250 67.6
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 1.1e-80 303.9 249 67.1
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.5e-80 303.5 242 67.4
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 2.5e-80 302.8 249 68.3
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 2.5e-80 302.8 248 66.9
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 3.3e-80 302.4 249 68.3
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 7.4e-80 301.2 251 66.9
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.3e-79 300.4 247 68.0
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 4.8e-79 298.5 234 69.2
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 6.2e-79 298.1 257 64.2
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 8.1e-79 297.7 257 64.2
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 1.1e-78 297.4 236 68.2
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 2.4e-78 296.2 250 66.8
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 2.4e-78 296.2 249 63.9
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 4.0e-78 295.4 257 63.4
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 5.3e-78 295.0 237 67.1
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 6.9e-78 294.7 248 65.3
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 1.2e-77 293.9 249 63.9
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 1.5e-77 293.5 235 68.5
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 7.6e-77 291.2 245 65.7
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 1.0e-76 290.8 232 66.4
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 1.7e-76 290.0 252 64.3
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 2.2e-76 289.7 251 64.5
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 8.4e-76 287.7 250 64.8
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 1.9e-75 286.6 248 62.5
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 3.2e-75 285.8 249 65.9
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 3.2e-75 285.8 255 65.9
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 7.1e-75 284.6 251 62.9
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 1.6e-74 283.5 253 64.8
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 2.1e-74 283.1 232 69.0
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 2.1e-74 283.1 230 65.2
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 3.5e-74 282.3 252 61.1
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 6.0e-74 281.6 250 63.6
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 3.0e-73 279.3 250 62.4
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 3.0e-73 279.3 249 63.1
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 3.9e-73 278.9 251 61.8
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 3.9e-73 278.9 250 61.6
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 6.7e-73 278.1 249 61.4
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 8.7e-73 277.7 252 64.3
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 1.1e-72 277.3 256 64.1
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 3.3e-72 275.8 251 62.9
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 5.7e-72 275.0 244 63.1
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 5.7e-72 275.0 233 65.2
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 7.4e-72 274.6 250 64.4
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 7.4e-72 274.6 257 63.0
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 1.3e-71 273.9 247 64.4
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 1.6e-71 273.5 232 63.4
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 2.1e-71 273.1 258 62.4
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 2.4e-70 269.6 231 62.8
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 2.4e-70 269.6 249 60.2
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 5.8e-69 265.0 247 62.8
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 1.7e-68 263.5 249 60.2
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 1.7e-68 263.5 238 62.2
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 2.2e-68 263.1 238 63.4
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 2.2e-68 263.1 238 63.4
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 3.8e-68 262.3 250 60.4
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 8.4e-68 261.2 246 61.4
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 1.1e-67 260.8 251 59.0
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 1.4e-67 260.4 253 59.7
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 1.4e-67 260.4 249 60.2
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 3.2e-67 259.2 248 59.7
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 4.2e-67 258.8 247 60.7
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 7.2e-67 258.1 239 62.3
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 2.1e-66 256.5 258 55.0
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 2.1e-66 256.5 249 58.6
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 7.9e-66 254.6 250 58.4
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 2.3e-65 253.1 244 59.8
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 3.9e-65 252.3 255 54.1
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 5.1e-65 251.9 254 56.3
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 8.7e-65 251.1 239 60.7
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.1e-64 250.8 257 53.7
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 1.1e-64 250.8 231 61.5
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.5e-64 250.4 255 53.7
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 1.5e-64 250.4 251 56.6
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.9e-64 250.0 247 59.5
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.3e-64 249.2 179 70.4
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 4.3e-64 248.8 247 59.1
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 5.7e-64 248.4 228 61.8
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.6e-63 246.9 258 52.3
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 1.1e-62 244.2 251 54.2
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 1.4e-62 243.8 248 53.2
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 1.4e-62 243.8 238 59.7
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 9.0e-62 241.1 258 51.6
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.0e-60 237.7 256 52.3
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 1.3e-60 237.3 247 56.3
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 2.2e-60 236.5 251 55.4
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 5.0e-60 235.3 250 52.4
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 6.5e-60 235.0 258 51.6
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 1.9e-59 233.4 246 56.1
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 3.2e-59 232.6 252 51.6
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 3.2e-59 232.6 252 51.6
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 4.6e-58 228.8 225 59.1
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 7.9e-58 228.0 257 49.8
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 2.0e-56 223.4 249 49.4
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 6.9e-54 214.9 258 47.7
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 5.0e-52 208.8 251 47.8
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 1.9e-51 206.8 251 47.4
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 1.9e-51 206.8 251 47.4
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 9.4e-51 204.5 252 47.6
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 1.6e-50 203.8 128 81.2
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 3.6e-50 202.6 194 62.4
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 2.3e-49 199.9 252 47.6
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 2.6e-48 196.4 253 45.5
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 1.8e-41 173.7 180 57.8
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 8.5e-36 154.8 124 61.3
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 1.5e-35 154.1 134 64.9
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 6.8e-33 145.2 248 41.9
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 4.7e-26 122.5 131 55.7
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 6.8e-25 118.6 195 37.4
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 3.4e-24 116.3 75 78.7
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 9.2e-22 108.2 181 39.8
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 4.3e-19 99.4 79 70.9
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 6.1e-18 95.5 151 44.4
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 6.1e-18 95.5 97 54.6
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 4.0e-17 92.8 87 55.2
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 1.7e-15 87.4 143 42.0
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 1.8e-14 84.0 68 63.2
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.4e-09 67.8 83 49.4
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 2.3e-09 67.0 117 38.5
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 1.3e-07 61.2 61 57.4


User provided reference genes

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