Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 4.4e-172 607.8 299 100.0
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 2.4e-138 495.7 308 81.5
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 2.0e-124 449.5 304 74.7
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 3.8e-115 418.7 306 68.3
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 1.6e-113 413.3 310 68.4
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 1.8e-112 409.8 311 68.2
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 3.9e-112 408.7 314 66.6
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 8.7e-112 407.5 303 68.0
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 1.1e-111 407.1 313 67.7
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 1.8e-109 399.8 295 70.8
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.8e-109 399.8 313 66.1
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.2e-108 397.1 287 69.3
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 1.2e-108 397.1 318 65.4
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.5e-108 396.7 289 68.9
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 3.4e-108 395.6 306 65.4
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 1.7e-107 393.3 281 69.8
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 2.9e-107 392.5 308 65.6
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 1.1e-106 390.6 296 66.6
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 2.4e-106 389.4 290 68.3
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 4.2e-106 388.7 294 67.7
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 5.5e-106 388.3 310 63.5
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 1.2e-105 387.1 310 63.5
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 1.6e-105 386.7 290 66.6
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 1.6e-105 386.7 290 67.2
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 2.7e-105 386.0 301 65.1
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 3.5e-105 385.6 312 63.1
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 3.5e-105 385.6 310 63.5
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 3.5e-105 385.6 281 68.3
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 1.3e-104 383.6 314 63.4
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 6.7e-104 381.3 306 63.1
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 1.5e-103 380.2 300 62.7
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 3.3e-103 379.0 297 64.3
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 5.6e-103 378.3 307 63.5
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 1.3e-102 377.1 284 66.9
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 2.8e-102 375.9 284 67.3
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 4.8e-102 375.2 297 65.0
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 4.8e-102 375.2 282 67.4
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 4.8e-102 375.2 309 63.1
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 6.2e-102 374.8 304 64.1
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 6.2e-102 374.8 298 65.1
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.1e-101 374.0 306 63.4
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 1.8e-101 373.2 301 63.1
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 3.1e-101 372.5 306 62.7
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 4.0e-101 372.1 296 65.2
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 5.3e-101 371.7 294 66.0
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 1.5e-100 370.2 301 62.8
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 1.5e-100 370.2 299 63.9
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 2.0e-100 369.8 308 62.3
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 5.8e-100 368.2 307 63.8
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 7.6e-100 367.9 280 65.4
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.7e-99 366.7 285 63.5
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 4.9e-99 365.2 294 63.9
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 6.5e-99 364.8 288 63.9
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 8.4e-99 364.4 308 63.0
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 1.1e-98 364.0 295 64.4
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 5.5e-98 361.7 290 62.8
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 5.5e-98 361.7 306 61.4
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 2.7e-97 359.4 307 60.9
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 2.7e-97 359.4 306 60.5
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 2.7e-97 359.4 280 64.3
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 1.0e-96 357.5 294 63.3
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 1.3e-96 357.1 306 61.1
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 3.0e-96 355.9 296 61.5
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 1.5e-95 353.6 281 64.4
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 1.9e-95 353.2 284 62.3
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 3.3e-95 352.4 292 59.6
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 4.8e-94 348.6 281 63.0
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 6.3e-94 348.2 311 58.2
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 6.3e-94 348.2 301 61.5
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 1.1e-93 347.4 279 61.6
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 1.1e-93 347.4 281 61.9
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 1.4e-93 347.1 282 63.1
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 6.9e-93 344.7 295 59.3
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 9.0e-93 344.4 295 60.7
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.0e-91 340.9 288 58.0
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 4.6e-89 332.0 291 58.1
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 1.8e-88 330.1 280 60.7
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 3.9e-88 328.9 298 57.0
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 1.9e-87 326.6 277 63.5
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 3.8e-83 312.4 281 56.2
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 1.1e-82 310.8 247 63.2
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 5.5e-82 308.5 310 52.3
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 2.7e-81 306.2 297 53.9
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 6.1e-81 305.1 299 56.5
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 7.9e-81 304.7 239 66.9
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 1.0e-80 304.3 237 67.5
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 3.3e-79 299.3 237 64.1
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 2.2e-78 296.6 308 53.6
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 4.8e-78 295.4 226 64.2
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 4.8e-78 295.4 283 53.4
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.2e-75 286.6 303 53.5
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 3.9e-72 275.8 218 67.4
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.3e-70 270.8 298 51.3
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.3e-67 260.8 198 65.7
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 3.8e-67 259.2 289 48.4
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 2.1e-65 253.4 411 36.3
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 4.4e-63 245.7 202 62.4
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 1.2e-60 237.7 214 61.7
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.3e-59 234.2 297 47.1
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 9.4e-58 228.0 128 83.6
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 6.3e-54 215.3 178 57.9
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 2.4e-53 213.4 192 58.9
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 2.5e-50 203.4 164 63.4
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 1.4e-48 197.6 152 66.4
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.6e-44 184.1 165 55.8
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 7.8e-44 181.8 152 55.9
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 3.9e-43 179.5 235 44.7
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 1.5e-42 177.6 159 58.5
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 1.9e-42 177.2 127 65.4
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 1.0e-40 171.4 127 63.8
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.6e-39 166.8 164 57.3
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 7.5e-39 165.2 132 60.6
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 7.5e-39 165.2 132 60.6
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 2.2e-38 163.7 120 63.3
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.9e-38 163.3 108 70.4
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 2.0e-36 157.1 116 71.6
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 5.2e-32 142.5 116 57.8
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 1.4e-29 134.4 108 65.7
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 5.4e-21 105.9 88 59.1
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.0e-19 101.7 103 53.4
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.0e-19 101.7 103 53.4
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.5e-18 97.8 104 52.9
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 1.9e-18 97.4 141 44.7
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.3e-18 96.7 103 50.5
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 4.4e-15 86.3 148 35.8
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 7.1e-13 79.0 88 50.0
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 4.8e-09 66.2 72 47.2
FvH4_7g17710 Fragaria vesca HOM05D005899 ORTHO05D045384 1.4e-08 64.7 58 55.2
FAN06G4129 Fragaria x ananassa HOM05D005899 ORTHO05D045384 9.0e-08 62.0 57 54.4


User provided reference genes

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