Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 4.7e-177 624.4 308 100.0
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 4.5e-156 554.7 313 87.5
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 1.6e-145 519.6 306 81.4
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 1.4e-144 516.5 316 81.0
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 3.7e-142 508.4 310 80.0
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 6.4e-142 507.7 311 79.4
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 6.4e-142 507.7 314 78.7
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 7.8e-140 500.7 315 78.1
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 1.5e-138 496.5 303 79.5
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 1.2e-137 493.4 308 81.5
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.3e-136 489.2 308 77.9
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 6.8e-136 487.6 301 79.7
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 1.3e-134 483.4 306 76.8
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 1.7e-134 483.0 308 76.6
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 2.2e-134 482.6 318 74.2
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 1.9e-133 479.6 312 74.4
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 1.9e-133 479.6 300 78.3
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 1.9e-133 479.6 307 76.9
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 2.4e-133 479.2 310 73.9
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 2.4e-133 479.2 314 74.5
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 5.4e-133 478.0 310 73.9
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 1.2e-132 476.9 302 77.5
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 1.2e-132 476.9 301 78.1
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 1.6e-132 476.5 310 73.9
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 6.0e-132 474.6 309 75.7
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.0e-131 473.8 307 75.9
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 1.3e-131 473.4 295 78.3
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 2.3e-131 472.6 300 76.7
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.5e-130 469.9 314 74.5
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 1.9e-130 469.5 297 77.1
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 3.3e-130 468.8 301 76.7
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 2.8e-129 465.7 325 70.8
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 1.1e-128 463.8 301 75.4
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 1.2e-127 460.3 316 71.2
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 2.2e-126 456.1 307 75.2
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 8.3e-126 454.1 302 73.2
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 1.4e-125 453.4 295 73.6
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 3.2e-125 452.2 294 76.2
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 5.4e-125 451.4 308 71.4
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 7.1e-125 451.1 298 72.8
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 3.5e-124 448.7 295 72.5
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 1.0e-123 447.2 303 69.6
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 5.1e-123 444.9 309 70.2
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 8.6e-123 444.1 302 71.5
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 1.5e-122 443.4 307 69.4
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.5e-122 442.6 298 68.8
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 4.3e-122 441.8 300 69.3
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 4.7e-121 438.3 296 71.3
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 1.1e-120 437.2 301 70.1
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 1.1e-120 437.2 304 68.4
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 1.1e-120 437.2 312 69.2
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 1.8e-120 436.4 303 69.6
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 1.8e-120 436.4 309 69.9
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 3.1e-120 435.6 324 67.6
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 4.0e-120 435.3 296 70.9
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 1.2e-119 433.7 306 68.3
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 2.0e-119 433.0 311 68.2
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 9.9e-119 430.6 303 69.3
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 1.3e-118 430.3 303 68.0
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 2.9e-118 429.1 301 68.4
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 2.9e-118 429.1 297 68.0
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 1.9e-117 426.4 295 69.2
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 2.4e-117 426.0 299 67.2
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 4.1e-117 425.2 303 67.7
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 9.2e-117 424.1 305 65.6
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 2.3e-115 419.5 303 66.3
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 3.0e-115 419.1 304 66.8
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 3.9e-115 418.7 308 64.9
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 6.6e-115 417.9 301 64.1
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 4.3e-114 415.2 304 66.4
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 7.3e-114 414.5 300 65.3
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 7.3e-114 414.5 304 65.1
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 1.6e-113 413.3 292 65.8
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 1.6e-113 413.3 301 67.8
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 1.4e-112 410.2 297 67.0
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 1.7e-110 403.3 300 64.3
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 2.9e-110 402.5 308 62.7
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 3.8e-110 402.1 300 66.0
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 2.5e-106 389.4 325 62.8
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 6.2e-105 384.8 306 61.8
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 3.1e-104 382.5 310 60.0
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 6.9e-104 381.3 265 70.6
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 4.5e-103 378.6 277 70.4
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.6e-100 370.2 303 64.4
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 4.6e-100 368.6 292 59.6
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 9.6e-98 360.9 310 60.0
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 6.2e-97 358.2 239 74.9
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 8.1e-97 357.8 237 75.5
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 1.1e-96 357.5 229 72.1
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 1.7e-94 350.1 296 56.4
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 1.1e-93 347.4 237 69.2
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 7.1e-85 318.2 235 70.6
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 3.9e-83 312.4 421 39.7
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.8e-81 306.2 294 53.7
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.4e-80 303.9 303 55.4
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.5e-79 300.4 199 72.9
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 2.0e-74 283.5 202 66.8
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 4.5e-71 272.3 206 64.6
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 2.2e-70 270.0 191 64.4
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.6e-68 263.8 303 51.8
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 5.0e-62 242.3 165 64.2
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 1.0e-59 234.6 192 61.5
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 5.2e-59 232.3 248 50.4
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 2.0e-58 230.3 150 70.7
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 2.0e-58 230.3 150 70.7
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 5.7e-58 228.8 137 74.5
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 3.7e-57 226.1 129 76.7
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 2.4e-56 223.4 157 69.4
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 9.1e-56 221.5 171 68.4
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 1.9e-53 213.8 128 79.7
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.9e-53 213.8 165 60.6
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 1.9e-53 213.8 141 68.8
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.2e-53 213.0 109 89.0
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 1.2e-47 194.5 159 62.9
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 8.5e-46 188.3 164 62.8
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 8.8e-43 178.3 128 61.7
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 1.4e-40 171.0 116 79.3
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 1.0e-30 138.3 108 67.6
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 5.8e-26 122.5 141 49.6
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 6.4e-25 119.0 87 63.2
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.4e-24 115.9 105 54.3
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.4e-24 115.9 105 54.3
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.4e-24 115.9 105 53.3
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.6e-23 114.4 106 54.7
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 1.1e-19 101.7 173 37.0
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.4e-18 96.7 90 52.2
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 1.1e-16 91.7 74 58.1
FvH4_7g17710 Fragaria vesca HOM05D005899 ORTHO05D045384 2.2e-09 67.4 84 45.2
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.9e-09 67.0 59 59.3
FAN06G4129 Fragaria x ananassa HOM05D005899 ORTHO05D045384 1.4e-08 64.7 83 44.6
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.5e-07 60.1 57 49.1
FAN19G2556 Fragaria x ananassa HOM05D010020 ORTHO05D015123 1.3e-06 58.2 152 34.9
FvH4_1g21970 Fragaria vesca HOM05D010020 ORTHO05D015123 1.7e-06 57.8 125 36.8


User provided reference genes

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