Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 6.5e-232 807.0 397 100.0
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 5.8e-196 687.6 360 93.3
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 3.3e-183 645.2 388 82.2
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 4.3e-159 565.1 366 76.2
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 7.4e-151 537.7 354 73.7
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.4e-146 523.5 389 67.6
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 4.2e-146 521.9 352 71.9
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 2.5e-138 496.1 345 69.3
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 9.4e-138 494.2 354 68.6
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 2.6e-135 486.1 352 66.5
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 5.7e-135 485.0 352 66.5
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 7.4e-135 484.6 354 65.5
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 7.4e-135 484.6 354 65.8
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.1e-133 480.7 375 62.9
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.8e-133 479.9 399 58.9
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 2.4e-133 479.6 391 60.6
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 2.6e-132 476.1 385 59.7
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.5e-132 475.7 376 62.8
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 5.9e-132 474.9 368 62.5
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 2.2e-131 473.0 354 63.3
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 1.1e-130 470.7 359 64.6
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 3.2e-130 469.2 349 65.0
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 9.4e-130 467.6 345 65.5
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 4.7e-129 465.3 390 60.5
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 1.8e-128 463.4 392 59.7
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 3.9e-128 462.2 393 57.8
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 1.1e-127 460.7 356 63.2
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 1.1e-127 460.7 387 58.1
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 2.0e-127 459.9 378 59.8
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 4.4e-127 458.8 306 70.6
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 1.7e-126 456.8 399 57.9
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 2.2e-126 456.4 347 61.4
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 4.8e-126 455.3 361 60.7
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 6.3e-126 454.9 352 63.9
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 6.3e-126 454.9 352 63.1
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 1.1e-125 454.1 378 59.0
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 1.8e-125 453.4 378 58.2
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 4.1e-125 452.2 358 62.0
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 5.3e-125 451.8 363 59.8
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 9.1e-125 451.1 327 67.0
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 9.1e-125 451.1 365 59.7
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 2.0e-124 449.9 391 58.6
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 4.5e-124 448.7 392 57.7
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 1.0e-123 447.6 390 56.9
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 3.8e-123 445.7 349 61.9
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 3.8e-123 445.7 370 60.3
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 5.0e-123 445.3 344 63.4
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 6.5e-123 444.9 388 57.2
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 8.5e-123 444.5 355 62.3
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 1.9e-122 443.4 356 61.8
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 3.2e-122 442.6 398 57.5
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 3.2e-122 442.6 393 58.3
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 4.2e-122 442.2 309 66.0
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 7.2e-122 441.4 355 60.8
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 2.1e-121 439.9 381 55.4
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 2.7e-121 439.5 342 61.4
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 8.0e-121 438.0 390 57.2
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 1.0e-120 437.6 314 65.0
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 1.8e-120 436.8 389 57.3
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 2.3e-120 436.4 342 64.3
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 4.0e-120 435.6 310 67.1
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 8.8e-120 434.5 352 59.4
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 1.2e-119 434.1 352 59.1
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 1.2e-119 434.1 380 56.8
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 1.5e-119 433.7 359 59.3
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 7.5e-119 431.4 372 55.9
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 9.7e-119 431.0 352 57.7
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 3.5e-116 422.5 336 59.2
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 4.5e-116 422.2 394 54.3
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 6.5e-115 418.3 350 60.3
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 8.5e-115 417.9 347 58.2
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 4.2e-114 415.6 345 60.3
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 8.0e-113 411.4 359 57.1
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 1.4e-112 410.6 360 57.2
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 4.0e-112 409.1 310 61.6
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 5.2e-112 408.7 391 53.5
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 6.8e-112 408.3 345 59.7
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 6.8e-112 408.3 355 55.8
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 3.4e-111 406.0 356 54.8
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 4.4e-111 405.6 406 50.7
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 9.8e-111 404.4 382 51.8
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.7e-110 403.7 377 54.6
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 2.2e-110 403.3 320 59.7
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 8.3e-110 401.4 362 53.6
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 5.4e-109 398.7 363 55.1
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 7.7e-108 394.8 424 50.2
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 3.8e-107 392.5 366 56.0
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 5.0e-107 392.1 390 53.8
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 5.0e-107 392.1 383 53.8
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 1.9e-106 390.2 361 52.9
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 3.3e-106 389.4 390 53.6
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 3.3e-106 389.4 354 52.8
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 4.2e-106 389.0 352 56.0
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 9.5e-106 387.9 344 53.2
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 1.2e-105 387.5 370 55.1
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 2.1e-105 386.7 378 53.2
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 4.7e-105 385.6 248 73.4
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 8.0e-105 384.8 338 54.1
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 1.4e-104 384.0 351 58.4
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 1.4e-104 384.0 418 48.1
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.0e-103 380.2 368 51.4
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 1.3e-102 377.5 323 55.1
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 2.8e-102 376.3 370 51.1
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 2.8e-102 376.3 381 51.4
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 4.9e-102 375.6 337 52.5
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 7.0e-101 371.7 337 52.2
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 2.0e-100 370.2 367 53.7
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.7e-100 369.8 357 49.6
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 2.7e-100 369.8 310 58.1
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 5.9e-100 368.6 267 64.4
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 1.7e-99 367.1 368 50.5
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 4.7e-97 359.0 383 49.1
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 6.1e-97 358.6 385 48.8
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 3.1e-96 356.3 383 48.8
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 3.1e-96 356.3 368 50.3
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 6.8e-96 355.1 388 48.2
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 8.9e-96 354.8 375 49.9
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.0e-95 353.6 383 48.6
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 7.5e-95 351.7 370 50.3
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 1.7e-94 350.5 339 51.3
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 1.7e-94 350.5 393 47.1
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 4.9e-94 349.0 337 53.4
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 8.3e-94 348.2 309 52.1
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 8.3e-94 348.2 389 49.4
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 8.3e-94 348.2 344 51.5
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 1.4e-93 347.4 371 50.1
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 3.9e-91 339.3 289 56.7
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 6.6e-91 338.6 377 47.7
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 1.2e-89 334.3 409 44.5
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 6.2e-89 332.0 404 45.3
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 6.2e-89 332.0 404 45.3
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 8.0e-89 331.6 363 49.0
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 1.8e-88 330.5 409 44.0
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 2.3e-88 330.1 277 55.2
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 6.8e-88 328.6 409 43.8
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.7e-86 323.9 267 60.7
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 4.1e-85 319.3 354 46.6
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 3.6e-81 306.2 337 46.6
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.0e-79 300.4 335 45.7
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.4e-77 293.5 330 44.8
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 2.7e-76 290.0 328 43.0
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 2.2e-70 270.4 341 44.6
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 5.4e-69 265.8 273 51.6
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.7e-68 263.5 339 42.5
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.3e-67 261.2 229 57.2
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 3.0e-67 260.0 344 40.1
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 9.6e-66 255.0 321 42.4
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 4.8e-65 252.7 321 42.4
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 1.7e-62 244.2 290 44.1
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 2.5e-58 230.3 323 41.5
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 6.2e-57 225.7 347 38.0
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 3.1e-56 223.4 326 38.0
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 4.0e-56 223.0 209 50.7
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.7e-54 217.6 318 35.5
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 4.2e-53 213.0 269 39.8
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 3.9e-51 206.5 297 38.4
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 8.7e-51 205.3 191 48.7
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 4.3e-50 203.0 290 37.9
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 4.3e-50 203.0 290 37.9
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 4.9e-46 189.5 146 61.6
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 7.9e-44 182.2 140 64.3
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.8e-43 181.0 156 55.8
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 4.5e-39 166.4 169 52.1
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.9e-37 161.0 118 66.1
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.8e-35 154.5 161 49.1
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.6e-33 147.9 111 64.9
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 7.7e-31 139.0 253 35.6
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.3e-30 138.3 80 73.8
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.6e-28 130.2 162 38.9
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 4.6e-28 129.8 89 65.2
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 1.7e-17 94.7 74 63.5
MCO14G045 Micromonas commoda HOM05D000861 ORTHO05D004749 2.8e-17 94.0 349 24.4
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 4.8e-17 93.2 60 70.0
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 4.8e-17 93.2 90 50.0
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.8e-11 74.7 103 39.8
PRCOL_00002048 Prasinoderma coloniale HOM05D000861 ORTHO05D004749 1.7e-09 68.2 239 21.8


User provided reference genes

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