Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006290 Carpinus fangiana HOM05D000911 ORTHO05D123717 1.4e-53 212.6 104 100.0
BcaC05g25047 Brassica carinata HOM05D001382 ORTHO05D001266 3.4e-07 58.5 74 36.5
C05p09890 Brassica napus HOM05D000911 ORTHO05D001266 3.4e-07 58.5 74 36.5
BolC5t29728H Brassica oleracea HOM05D000911 ORTHO05D001266 3.4e-07 58.5 74 36.5
CsaV3_2G034880 Cucumis sativus L. HOM05D000911 ORTHO05D000890 3.4e-07 58.5 98 34.7
THA.LOC104823528 Tarenaya hassleriana HOM05D000911 ORTHO05D000890 3.4e-07 58.5 78 35.9
ClCG02G008870 Citrullus lanatus HOM05D000911 ORTHO05D000890 4.5e-07 58.2 75 40.0
CSS0016768 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D000890 5.9e-07 57.8 78 37.2
Lj4g0025071 Lotus japonicus HOM05D000911 ORTHO05D000890 5.9e-07 57.8 76 38.2
Medtr4g061070 Medicago truncatula HOM05D000911 ORTHO05D000890 5.9e-07 57.8 80 36.2
MD11G1123300 Malus domestica HOM05D000911 ORTHO05D000890 7.7e-07 57.4 80 36.2
MSTRG.18632 Avicennia marina HOM05D000911 ORTHO05D000890 1.0e-06 57.0 75 38.7
MELO3C019277.2 Cucumis melo HOM05D000911 ORTHO05D000890 1.0e-06 57.0 75 38.7
ECA238G1216 Erigeron canadensis HOM05D000911 ORTHO05D000890 1.0e-06 57.0 75 38.7
FAN25G1422 Fragaria x ananassa HOM05D000911 ORTHO05D000890 1.0e-06 57.0 106 34.0
HanXRQChr14g0432951 Helianthus annuus HOM05D000911 ORTHO05D000890 1.0e-06 57.0 75 38.7
Lsat_1_v5_gn_2_25321 Lactuca sativa HOM05D000911 ORTHO05D000890 1.0e-06 57.0 75 38.7
FAN21G3400 Fragaria x ananassa HOM05D000911 ORTHO05D000890 1.3e-06 56.6 106 34.0
Sed0006172 Sechium edule HOM05D000911 ORTHO05D000890 1.3e-06 56.6 75 40.0
CsaV3_1G014500 Cucumis sativus L. HOM05D000911 ORTHO05D000890 1.7e-06 56.2 69 37.7
FvH4_3g33680 Fragaria vesca HOM05D000911 ORTHO05D000890 1.7e-06 56.2 106 34.0
FAN11G3651 Fragaria x ananassa HOM05D000911 ORTHO05D000890 1.7e-06 56.2 106 34.0
Manes.04G026500 Manihot esculenta HOM05D000911 ORTHO05D000890 1.7e-06 56.2 104 32.7
Phvul.006G149600 Phaseolus vulgaris HOM05D000911 ORTHO05D000890 1.7e-06 56.2 69 37.7
SalBow7G2265 Salvia bowleyana HOM05D000911 ORTHO05D000890 1.7e-06 56.2 104 32.7
GSVIVG01025118001 Vitis vinifera HOM05D000911 ORTHO05D000890 1.7e-06 56.2 73 38.4
Actinidia03753 Actinidia chinensis HOM05D000911 ORTHO05D000890 2.2e-06 55.8 69 39.1
Aqoxy2G01239 Aquilegia oxysepala HOM05D000911 ORTHO05D000890 2.2e-06 55.8 69 40.6
Migut.D02175 Erythranthe guttata HOM05D000911 ORTHO05D000890 2.2e-06 55.8 73 38.4
Glyma.11G151288 Glycine max HOM05D000911 ORTHO05D000890 2.2e-06 55.8 88 34.1
Lj3g0015432 Lotus japonicus HOM05D000911 ORTHO05D000890 2.2e-06 55.8 73 37.0
Oeu022271.1 Olea europaea HOM05D000911 ORTHO05D000890 2.2e-06 55.8 73 38.4
Cpa.g.sc87.88 Carica papaya HOM05D000911 ORTHO05D000890 2.9e-06 55.5 65 43.1
Cc01_g11680 Coffea canephora HOM05D000911 ORTHO05D000890 2.9e-06 55.5 73 38.4
COL.COLO4_31788 Corchorus olitorius HOM05D000911 ORTHO05D000890 2.9e-06 55.5 76 35.5
Glyma.12G072500 Glycine max HOM05D000911 ORTHO05D000890 2.9e-06 55.5 69 40.6
PGR042G3273 Punica granatum HOM05D000911 ORTHO05D000890 2.9e-06 55.5 93 35.5
SGA_v2.0_scaffold316G48428 Striga asiatica HOM05D000911 ORTHO05D000890 2.9e-06 55.5 73 38.4
Gohir.D06G154600 Gossypium hirsutum HOM05D000911 ORTHO05D000890 3.8e-06 55.1 75 36.0
PGSC0003DMG400025374 Solanum tuberosum HOM05D000911 ORTHO05D000890 3.8e-06 55.1 71 39.4
TWI75G1619 Tripterygium wilfordii HOM05D000911 ORTHO05D000890 3.8e-06 55.1 73 37.0
Zm00001eb397170 Zea mays HOM05D000911 ORTHO05D000890 3.8e-06 55.1 71 36.6
Aa31sc36G60 Aethionema arabicum HOM05D000911 ORTHO05D000890 5.0e-06 54.7 69 37.7
ATR1159G064 Amborella trichopoda HOM05D000911 ORTHO05D000890 5.0e-06 54.7 69 39.1
arahy.Tifrunner.gnm1.ann1.RIM768 Arachis hypogaea HOM05D000911 ORTHO05D000890 5.0e-06 54.7 76 36.8
arahy.Tifrunner.gnm1.ann1.YB5YRA Arachis hypogaea HOM05D000911 ORTHO05D000890 5.0e-06 54.7 76 36.8
Cpa.g.c34684 Carica papaya HOM05D000911 ORTHO05D000890 5.0e-06 54.7 69 39.1
Ca_19238_v3 Cicer arietinum L. HOM05D000911 ORTHO05D000890 5.0e-06 54.7 69 39.1
Lalb_Chr19g0137471 Lupinus albus HOM05D000911 ORTHO05D000890 5.0e-06 54.7 69 39.1
Manes.16G006200 Manihot esculenta HOM05D000911 ORTHO05D000890 5.0e-06 54.7 73 35.6
PGR042G1139 Punica granatum HOM05D000911 ORTHO05D000890 5.0e-06 54.7 76 36.8
Sabra08G0148700 Salix brachista HOM05D000911 ORTHO05D000890 5.0e-06 54.7 69 39.1
Sc05g0009240 Simmondsia chinensis HOM05D000911 ORTHO05D000890 5.0e-06 54.7 67 41.8
PGSC0003DMG400016478 Solanum tuberosum HOM05D000911 ORTHO05D000890 5.0e-06 54.7 73 35.6
TPR.G29305 Trifolium pratense HOM05D000911 ORTHO05D000890 5.0e-06 54.7 69 39.1
Atru.chr6.3202 Acer truncatum HOM05D000911 ORTHO05D000890 6.5e-06 54.3 79 36.7
Aa31LG1G2980 Aethionema arabicum HOM05D000911 ORTHO05D000890 6.5e-06 54.3 75 36.0
AL3G18990 Arabidopsis lyrata HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
AT3G07630 Arabidopsis thaliana HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
BcaC01g04272 Brassica carinata HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
BcaC05g29557 Brassica carinata HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
A03p35380 Brassica napus HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
A05p40570 Brassica napus HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 6.5e-06 54.3 73 35.6
C03p42990 Brassica napus HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
C05p59680 Brassica napus HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
BolC5t34622H Brassica oleracea HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
BraA03t12716Z Brassica rapa HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
BraA05t22788Z Brassica rapa HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 6.5e-06 54.3 73 35.6
CANSAT54G1286 Cannabis sativa HOM05D000911 ORTHO05D000890 6.5e-06 54.3 69 39.1
Carub.0003s0721 Capsella rubella HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
CARHR082330 Cardamine hirsuta HOM05D000911 ORTHO05D000890 6.5e-06 54.3 69 39.1
Ciclev10028573m.g Citrus clementina HOM05D000911 ORTHO05D000890 6.5e-06 54.3 69 39.1
Haze_23942 Corylus avellana HOM05D000911 ORTHO05D000890 6.5e-06 54.3 69 39.1
Glyma.09G004200 Glycine max HOM05D000911 ORTHO05D000890 6.5e-06 54.3 69 39.1
MBI05_g17779_MAGBIO Magnolia biondii HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
MD03G1109900 Malus domestica HOM05D000911 ORTHO05D000890 6.5e-06 54.3 69 39.1
PSO210G2249 Papaver somniferum HOM05D000911 ORTHO05D000890 6.5e-06 54.3 76 34.2
PSO832G0644 Papaver somniferum HOM05D000911 ORTHO05D000890 6.5e-06 54.3 76 34.2
Psat7g222120 Pisum sativum HOM05D000911 ORTHO05D000890 6.5e-06 54.3 69 39.1
Potri.008G195500 Populus trichocarpa HOM05D000911 ORTHO05D000890 6.5e-06 54.3 69 39.1
Prupe.6G092500 Prunus persica HOM05D000911 ORTHO05D000890 6.5e-06 54.3 69 39.1
Sp3g06570 Schrenkiella parvula HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 40.3
Sed0019556 Sechium edule HOM05D000911 ORTHO05D000890 6.5e-06 54.3 71 36.6
Hund21413 Selenicereus undatus HOM05D000911 ORTHO05D000890 6.5e-06 54.3 67 41.8
Solyc11g072520.3 Solanum lycopersicum HOM05D000911 ORTHO05D000890 6.5e-06 54.3 69 39.1
Sopen11g030170 Solanum pennellii HOM05D000911 ORTHO05D000890 6.5e-06 54.3 69 39.1
unitig_37.g12681 Utricularia gibba HOM05D000911 ORTHO05D002648 6.5e-06 54.3 69 39.1
VMungo0540G2468 Vigna mungo HOM05D000911 ORTHO05D000890 6.5e-06 54.3 69 36.2
MSTRG.14638 Avicennia marina HOM05D000911 ORTHO05D000890 8.5e-06 53.9 73 35.6
Cfa011376 Carpinus fangiana HOM05D000911 ORTHO05D000890 8.5e-06 53.9 69 39.1
Haze_06809 Corylus avellana HOM05D000911 ORTHO05D000890 8.5e-06 53.9 76 35.5
Thhalv10007886m.g Eutrema salsugineum HOM05D000911 ORTHO05D000890 8.5e-06 53.9 73 35.6
Thhalv10020951m.g Eutrema salsugineum HOM05D000911 ORTHO05D000890 8.5e-06 53.9 67 40.3
FvH4_3g01940 Fragaria vesca HOM05D000911 ORTHO05D000890 8.5e-06 53.9 76 35.5
FAN25G3392 Fragaria x ananassa HOM05D000911 ORTHO05D000890 8.5e-06 53.9 76 35.5
Gohir.A06G148600 Gossypium hirsutum HOM05D000911 ORTHO05D000890 8.5e-06 53.9 75 34.7
Gorai.010G180700 Gossypium raimondii HOM05D000911 ORTHO05D000890 8.5e-06 53.9 75 34.7
MD05G1348000 Malus domestica HOM05D000911 ORTHO05D000890 8.5e-06 53.9 78 33.3
Oeu025271.1 Olea europaea HOM05D000911 ORTHO05D000890 8.5e-06 53.9 69 36.2
Sp1g10420 Schrenkiella parvula HOM05D000911 ORTHO05D000890 8.5e-06 53.9 73 35.6
Sed0004306 Sechium edule HOM05D000911 ORTHO05D000890 8.5e-06 53.9 72 36.1
Solyc02g080620.3 Solanum lycopersicum HOM05D000911 ORTHO05D000890 8.5e-06 53.9 70 37.1
Sopen02g025330 Solanum pennellii HOM05D000911 ORTHO05D000890 8.5e-06 53.9 70 37.1


User provided reference genes

Program Settings